Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00010 ATGGCAACCTCACAAGTCACTGCATCATTGAGGAATTTGTCTACATTTGAAAGGATTCAACCCTCAACGCTTCGATTTCCTTCTGTCGGGCACGTGAGAATTGGCACTCTCAGGCAAAACTCGTTTCCCTCTCTCGTTGTCAAAGCTGCCACCGTTGTCGCCCCCAAGCACACCACTGTTAGCCCTCTGGGTGACAGAGTACTGGTAAAAATTAAGGATGCTGAGGAGAAGACTGCAGGTGGGATTTTACTGCCAGCAACTGCTCAAAGCAAACCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGAAAGTCGGTTGGGAAGAACAAAGTGGATATTAGTGTAAAGACTGGTGCACAAGTTATGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCTAAGCATCTTATACTGAAGGACGATGACATCATTGGTATCCTTGAAACTGACGAGGTCAAGGATCTTAAACCCTTGAATGATAGAGTCTTGATAAAGGTTGCTGATGCTGAGGAAAAAACTGCTGGAGGTTTGTTGCTTACGGAGGCAACCAAGGATAAACCATCTATTGGAACGGTGATAGCAGTTGGTCCGGGACCTCTGGACGAGGAAGGTAACAGAAAACCATTGTCCATCATACCTGGGAATACTGTTCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGCAAAGATGATTCTAACTACATTGCTTTGAGGGCTTCAGAAGTCATGGCTATCTTGTCATAG 756 0.4577 MATSQVTASLRNLSTFERIQPSTLRFPSVGHVRIGTLRQNSFPSLVVKAATVVAPKHTTVSPLGDRVLVKIKDAEEKTAGGILLPATAQSKPQGGEVVAVGEGKSVGKNKVDISVKTGAQVMYSKYAGTEVEFNGSKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVADAEEKTAGGLLLTEATKDKPSIGTVIAVGPGPLDEEGNRKPLSIIPGNTVLYSKYAGNDFKGKDDSNYIALRASEVMAILS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00010 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Vium1943g00010 251 FunFam 20 kDa chaperonin, chloroplastic 53 152 - -
Vium1943g00010 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Vium1943g00010 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Vium1943g00010 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Vium1943g00010 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Vium1943g00010 251 FunFam 10 kDa chaperonin 155 251 - -
Vium1943g00010 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 CDD cpn10 62 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 155 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vium1943g00010 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium1943g00010 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00010 Vium-Chr1943 49566 51844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00010 1 251 Calmodulin-binding Proteins AT5G20720 73.307 1.31e-131 370