Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00008 ATGTGGGATCAAAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGGGCCAGTGCAAGTGATGAAAAGCAGAGTTCGGATTCCAAAAGTATCGTGGAGTTGACTAATGGAACATCAGAAGAAGGCCAGGAAATAACCAATGATGACGCCCCCGAGAAGAATCCTCAATATACCACGGTTTATGTTGGCAATCTTGCTCCGGAGGTCACTTCTGTTGATCTCCATCACCATTTTCATTCTCTTGGTGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATTCAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTATAAAGTGTTCATGGGGTAGCAAACCTACTCCTCCAGGAACTGCCTCTACTCCTCTTCCGCCTCCTACTTCTGCAAATGTGCCTGGTTTCTCTCTTGCTAGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACACGCCCTTCTGCATCAGCAAGGACAGCATGCCCTAAAACAGGTAGCCATGGGAATGGGTGCTCCAGGGGCTGGTTATGATGCAAGGTTTCAGAATGTTGCTACCACCCAGCACCTAATGTACTATCAGTAA 750 0.4627 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKSIVELTNGTSEEGQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRFSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPTSANVPGFSLASLAAYERQMALSKMGGAHALLHQQGQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00008 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Vium1943g00008 249 Gene3D - 67 168 IPR012677 -
Vium1943g00008 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 164 IPR000504 GO:0003723
Vium1943g00008 249 SUPERFAMILY RNA-binding domain, RBD 81 169 IPR035979 GO:0003676
Vium1943g00008 249 SUPERFAMILY RNA-binding domain, RBD 1 51 IPR035979 GO:0003676
Vium1943g00008 249 Gene3D - 1 62 IPR012677 -
Vium1943g00008 249 MobiDBLite consensus disorder prediction 47 86 - -
Vium1943g00008 249 FunFam Oligouridylate-binding protein 1C 67 168 - -
Vium1943g00008 249 SMART rrm1_1 91 160 IPR000504 GO:0003723
Vium1943g00008 249 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 167 - -
Vium1943g00008 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 158 IPR000504 GO:0003723
Vium1943g00008 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00008 Vium-Chr1943 28698 33086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00008 7 164 Eukaryotic Initiation Factors Gene Family AT1G49760 30.675 3.38e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00008 K13201 - gmx:100813736 474.552