Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00007 ATGTCGGCAACATTCATCCCCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCGGCTGCAGGTGCCCTTGAAGGATGCAAGCTTATCAGGAAAGAGAAGTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTCAATATTTTTGTTGGTGACCTTAGTCCTGAGGTCACAGATGCGACTTTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAAAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGGGCCAGTGCAAGTGATGAAAAGCAGAGTTCGGATTCCAAAAGTATCGTGGAGTTGACTAATGGAACATCAGAAGAAGGCCAGGAAATAACCAATGATGACGCCCCCGAGAAGAATCCTCAATATACCACGGTTTATGTTGGCAATCTTGCTCCGGAGGTCACTTCTGTTGATCTCCATCACCATTTTCATTCTCTTGGTGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATTCAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTATAAAGTGTTCATGGGGTAGCAAACCTACTCCTCCAGGAACTGCCTCTACTCCTCTTCCGCCTCCTACTTCTGCAAATGTGCCTGGTTTCTCTCTTGCTAGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACACGCCCTTCTGCATCAGCAAGGACAGCATGCCCTAAAACAGGTAGCCATGGGAATGGGTGCTCCAGGGGCTGGTTATGATGCAAGGTTTCAGAATGTTGCTACCACCCAGCACCTAATGTACTATCAGTAA 1014 0.4606 MSATFIPRLQNHFFKSFFRLQVPLKDASLSGKRSFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKSIVELTNGTSEEGQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRFSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPTSANVPGFSLASLAAYERQMALSKMGGAHALLHQQGQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00007 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 252 IPR000504 GO:0003723
Vium1943g00007 337 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 255 - -
Vium1943g00007 337 MobiDBLite consensus disorder prediction 135 174 - -
Vium1943g00007 337 Gene3D - 155 256 IPR012677 -
Vium1943g00007 337 Gene3D - 48 151 IPR012677 -
Vium1943g00007 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 129 IPR000504 GO:0003723
Vium1943g00007 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Vium1943g00007 337 FunFam oligouridylate-binding protein 1-like isoform X2 55 150 - -
Vium1943g00007 337 SMART rrm1_1 179 248 IPR000504 GO:0003723
Vium1943g00007 337 SMART rrm1_1 58 131 IPR000504 GO:0003723
Vium1943g00007 337 FunFam Oligouridylate-binding protein 1C 155 256 - -
Vium1943g00007 337 SUPERFAMILY RNA-binding domain, RBD 49 140 IPR035979 GO:0003676
Vium1943g00007 337 SUPERFAMILY RNA-binding domain, RBD 169 257 IPR035979 GO:0003676
Vium1943g00007 337 CDD RRM2_PUB1 56 135 - -
Vium1943g00007 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00007 Vium-Chr1943 28641 33086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00007 36 246 Eukaryotic Initiation Factors Gene Family AT3G16380 26.339 2.60e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00007 K13201 - gmx:100813736 592.423