Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00005 ATGCAGCAACAGAGGTTAAGACAGCATGCCATGATGCAACCCTCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCCCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCGGCTGCAGGTGCCCTTGAAGGATGCAAGCTTATCAGGAAAGAGAAGTCATCCTATGGTTTTGTGGACTACTTCGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTCAATATTTTTGTTGGTGACCTTAGTCCTGAGGTCACAGATGCGACTTTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAAAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGGGCCAGTGCAAGTGATGAAAAGCAGAGTTCGGATTCCAAAAGTATCGTGGAGTTGACTAATGGAACATCAGAAGAAGGCCAGGAAATAACCAATGATGACGCCCCCGAGAAGAATCCTCAATATACCACGGTTTATGTTGGCAATCTTGCTCCGGAGGTCACTTCTGTTGATCTCCATCACCATTTTCATTCTCTTGGTGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATTCAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTATAAAGTGTTCATGGGGTAGCAAACCTACTCCTCCAGGAACTGCCTCTACTCCTCTTCCGCCTCCTACTTCTGCAAATGTGCCTGGTTTCTCTCTTGCTAGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACACGCCCTTCTGCATCAGCAAGGACAGCATGCCCTAAAACAGGTAGCCATGGGAATGGGTGCTCCAGGGGCTGGTTATGATGCAAGGTTTCAGAATGTTGCTACCACCCAGCACCTAATGTACTATCAGTAA 1236 0.4636 MQQQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSAAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKSIVELTNGTSEEGQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRFSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPTSANVPGFSLASLAAYERQMALSKMGGAHALLHQQGQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00005 411 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Vium1943g00005 411 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Vium1943g00005 411 FunFam Oligouridylate-binding protein 1C 229 330 - -
Vium1943g00005 411 CDD RRM2_PUB1 130 209 - -
Vium1943g00005 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Vium1943g00005 411 MobiDBLite consensus disorder prediction 209 248 - -
Vium1943g00005 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Vium1943g00005 411 SMART rrm1_1 253 322 IPR000504 GO:0003723
Vium1943g00005 411 SMART rrm1_1 132 205 IPR000504 GO:0003723
Vium1943g00005 411 SMART rrm1_1 47 116 IPR000504 GO:0003723
Vium1943g00005 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Vium1943g00005 411 Gene3D - 229 330 IPR012677 -
Vium1943g00005 411 Gene3D - 1 128 IPR012677 -
Vium1943g00005 411 Gene3D - 129 226 IPR012677 -
Vium1943g00005 411 SUPERFAMILY RNA-binding domain, RBD 123 214 IPR035979 GO:0003676
Vium1943g00005 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 329 - -
Vium1943g00005 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Vium1943g00005 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Vium1943g00005 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Vium1943g00005 411 SUPERFAMILY RNA-binding domain, RBD 243 331 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00005 Vium-Chr1943 28474 33086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00005 47 320 Eukaryotic Initiation Factors Gene Family AT3G16380 26.804 1.41e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00005 K13201 - gmx:100813736 791.186