Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00004 ATGTCCACCTCCTCGGAGTATTCAGGATTTTCCGGTAACCGGCCGGTGAAGACGACGCCGGAGAAGTCCACGTTCTCTCAGACTTGCAGTCTATTGAGTCAATACCTCAAGGACAAGGGTACATTCGGAGACCTTACTCTCGGGATGACACGCACCGTCGAAGCAAACGGTTCTTCTTCTGAAGCATCGTGTCACCCTCCAACAACCATGGAGTTGTTTCCCACCATCTTGACCCAAAGGAACCTTTCTGTTGTGGATTTCTTCTCTCCGGAGCCTGCTTATCTTCACCAATCAGAGCTTCCAACTTTTGTGAATATGTCAAGTGGTTTCAAGTCTGTGGAGAAGGAGCCCAAATCTGCTCCGTTGACAATCTTTTATGCTGGACAAGTGATTGTGTTTAATGATTTTCCCCCTGGAAAAATGGAGGAGATAATGGCACTGGCAAGCAAGGGAATGCCCCAAAGCCCAAACTACCAGGCATATGCTCACACTAGAAACCAGCAAGGAAATCATACTTCCTTTGTTGCTAATGTCCCTCAACCATCTCCCATACCAACTGTTCGAGATCTTCCAATTGCGAGGAAAGTTTCACTTCATCGGTTCTTCGAGAAGAGAAAACACAGAATTGCTGCCAATGCGCCATATCAAATAAACAATCTCAACTCTGTTGCAAATAAGCATGCCGCAGAATCCATTCCATGGCTTGGATTTGGTGTTCCATCAAAACAAATATGA 735 0.4599 MSTSSEYSGFSGNRPVKTTPEKSTFSQTCSLLSQYLKDKGTFGDLTLGMTRTVEANGSSSEASCHPPTTMELFPTILTQRNLSVVDFFSPEPAYLHQSELPTFVNMSSGFKSVEKEPKSAPLTIFYAGQVIVFNDFPPGKMEEIMALASKGMPQSPNYQAYAHTRNQQGNHTSFVANVPQPSPIPTVRDLPIARKVSLHRFFEKRKHRIAANAPYQINNLNSVANKHAAESIPWLGFGVPSKQI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00004 244 SMART tify_2 115 150 IPR010399 -
Vium1943g00004 244 Pfam Jas motif 191 216 IPR018467 -
Vium1943g00004 244 MobiDBLite consensus disorder prediction 1 23 - -
Vium1943g00004 244 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Vium1943g00004 244 Pfam tify domain 116 149 IPR010399 -
Vium1943g00004 244 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 21 224 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00004 Vium-Chr1943 21533 23794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00004 1 239 Tify Gene Family AT1G19180 40.840 9.31e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium1943g00004 tify 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00004 K13464 - gmx:100527510 314.694