Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00002 ATGGTGGTAATTGTGGGAGCTCCATCTCTCAAACACGCACGACAACCTAGCCAGGTAGTTTTCCATTCCCGTAGGTGGGTACCCAAATTCAACAAACAAAACAAAAAAAGGCAAATCCAAAACAATCAGAGAACCTCAATCTTTCCGAGCAGCGGCCCATTTCTCTCCCGGACGCATAAGATTTCCGGCACGGCGATGGCCGCTGTTCGCCTATTCTTCTTCCTCCTCCTCCTCTCCCTCCTCCCTCTCTCCCATCCTCTCTCGGATAACCAAGCTCTCCTCAACCTAAAAAAATCCTTCTCCGACCCCCAATCCCTCTCCTCCTGGGTCCCCGACCAGAACCCTTGCTCCTCCCGTTGGGTCGGCGTCATCTGCGTCAACAACGTCATCAACAGCCTCCATCTCACCGACCTCTCCCTCTCCGGCACCATAGACATCGAAGCCCTCTCCCAGATCCCCTCTCTCCGCTCCATCAGCTTCGTCAACAACAACTTCTCCGGCCCCATTCCTCCTTTCAACAAACTCGGAGTCCTCAAAGCCATCTACTTGACCAACAACAAGTTCTCCGGCCCCATCCCCTCCGACTTCTTCTCCCAGTTAGCCTCCTTGAAGAAAATATGGCTTTCCAACAACAAATTTTCTGGCCCCGTCCCCCAATCCTTAACCACCCTCCGCTTCCTCTCCGAGCTTCATCTCGAGAACAACGAGTTCTCCGGCCCCGTCCCCGAACTTAAACAGGACATCAAATCACTCGACTTCTCCAACAACAAGCTCCAAGGCCCGATCCCCATCTCCATGTCGCGCTTCGACGCCAAATCTTTCTCCGGCAACATTGAACTCTGCGGGATGCCGCTGGATAAACCGTGTGAGTCCGCAGCCAGTGAAGGCCCCGGTTGGGGATTGAAGGTGGTTATTATCATCTTCATTGCAGCTGTTCTCGCCGGCGTTTTCGTCATGGCGCGATCCAAGCGTCAACGCGACGATGACTTCAGCGTGATGAGCAGGGATAACGCGGAAGAGGTGGTGCAGGTGCACGTGCCAAGCACCAACCACAGCAGGGGAACCTCCGATGGGAGCAAGAAGGAGTCGACGACGTCGAAGAAAGGGGCGGGGCGGAGTATTGGTGACCTCGTGATGGTGAACGACGAGAGGGGCACGTTTGGGTTGCCTGATCTGATGAAGGCTGCGGCGGAGGTTCTCGGAAACGGTGGGCTGGGTTCGGCGTACAAAGCCGCCATGGCCAGTGGGTTGTCTGTGGTGGTAAAGCGGATGCGGGAGATGAATAAAGTGAGCAGAGACATCTTCGACGCCGAGATGAGACGTTTTGGAAGAATCAGAAACCCTAACATCATCACGCCTCTCGCTTACCATTACCGCAAGGAGGAGAAGCTGTTCGTCACAGAGTACATGCCCAAAGGAAGCTTGTTATACGTCTTGCACGGTGACAGAGGATCGAGTCATTCGGACCTGAACTGGCCAATCCGTTTGAAAATCGTGAAGGGAATAGCACGAGGGTTAGGGTTTCTGTATAAAGAATTTTCTAGCGAAGACCTGCCACATGGAAACCTGAAATCAAGCAATGTTCTGCTAACTGATAATTACGAAGCTCTCCTCGGAGATTTCGCCTTTCATCCTCTCATGAACCACAACTACGCCGTACAGACAATGTTTGCATACAAAACTCCAGATTACGTAACATACCAGCGTGTGACACAGAAAACCGACGTCTACTGCCTGGGAATCATCGTTCTTGAGGTGATCACCGGGAAATTCCCTTCTCAGTATCACAGCAATGGCAAGGGTGGCACTGACGTGGTGCAATGGGTGCTAACTGCAATCTCTGACAGAAGAGAGGCGGAATTGATCGATCCAGAGTTGAAGAGCAGTCACTCTAACTCCCTGAATCAAATGCTGCAACTTCTCCAAATAGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAACATGAAAGAAGCCATTAGGAGGATAGAGGAGGTTCAGGTTTAA 2013 0.5241 MVVIVGAPSLKHARQPSQVVFHSRRWVPKFNKQNKKRQIQNNQRTSIFPSSGPFLSRTHKISGTAMAAVRLFFFLLLLSLLPLSHPLSDNQALLNLKKSFSDPQSLSSWVPDQNPCSSRWVGVICVNNVINSLHLTDLSLSGTIDIEALSQIPSLRSISFVNNNFSGPIPPFNKLGVLKAIYLTNNKFSGPIPSDFFSQLASLKKIWLSNNKFSGPVPQSLTTLRFLSELHLENNEFSGPVPELKQDIKSLDFSNNKLQGPIPISMSRFDAKSFSGNIELCGMPLDKPCESAASEGPGWGLKVVIIIFIAAVLAGVFVMARSKRQRDDDFSVMSRDNAEEVVQVHVPSTNHSRGTSDGSKKESTTSKKGAGRSIGDLVMVNDERGTFGLPDLMKAAAEVLGNGGLGSAYKAAMASGLSVVVKRMREMNKVSRDIFDAEMRRFGRIRNPNIITPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGSSHSDLNWPIRLKIVKGIARGLGFLYKEFSSEDLPHGNLKSSNVLLTDNYEALLGDFAFHPLMNHNYAVQTMFAYKTPDYVTYQRVTQKTDVYCLGIIVLEVITGKFPSQYHSNGKGGTDVVQWVLTAISDRREAELIDPELKSSHSNSLNQMLQLLQIGAACTESNPDQRLNMKEAIRRIEEVQV 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00002 670 Pfam Leucine rich repeat N-terminal domain 88 125 IPR013210 -
Vium1943g00002 670 Gene3D Ribonuclease Inhibitor 88 246 IPR032675 -
Vium1943g00002 670 Pfam Leucine rich repeat 178 236 IPR001611 GO:0005515
Vium1943g00002 670 Gene3D Phosphorylase Kinase; domain 1 400 470 - -
Vium1943g00002 670 FunFam Nuclear pore complex protein NUP107 87 243 - -
Vium1943g00002 670 Gene3D Ribonuclease Inhibitor 249 289 IPR032675 -
Vium1943g00002 670 SUPERFAMILY L domain-like 87 269 - -
Vium1943g00002 670 Gene3D Transferase(Phosphotransferase) domain 1 471 670 - -
Vium1943g00002 670 MobiDBLite consensus disorder prediction 342 372 - -
Vium1943g00002 670 SUPERFAMILY Protein kinase-like (PK-like) 398 665 IPR011009 -
Vium1943g00002 670 Pfam Protein kinase domain 398 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1943g00002 670 ProSiteProfiles Protein kinase domain profile. 394 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1943g00002 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 74 669 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00002 Vium-Chr1943 4195 6606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00002 67 670 Receptor kinase-like Gene Family AT3G42880 50.472 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1943g00002 Pkinase 7.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00002 - - vum:124828555 1269.22