Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1941g00009 ATGTCTGGTGTTGAGTCTGACCACAACAACATCAAAGGGGTACCAACTCATGGTGGACGCTACATTCAGTACAATATCTATGGCAACCTCTTCGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGTGCTTATGGTATTGTTTGTGCTGCTGTAAATGCGGAGACAGGAGAGGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAGAGGACCTTGCGAGAAATTAAACTTCTTCGGCACATGGATCATGCAAACATTATGTCCATTAGAGATATTATACGACCTCCTCAGAAGGAAAACTTCAATGATGTATACCTTGTTTCCGAGTTAATGGACACAGATCTCCATCAAATAATACGTTCCAATCAACCACTGACTGATGATCATTGTCGGTATTTTCTGTATCAATTGCTTCGAGGACTCAAATATGTACATTCAGCAAATGTTTTGCACCGTGATCTAAAGCCTAGCAATTTGCTATTGAATGCCAATTGTGACCTTAAGATTGCCGATTTTGGCCTTGCTAGAACTACATCTGAAACTGATTTTATGACTGAGTATGTGGTCACTCGATGGTATCGAGCTCCCGAGTTACTTCTTAATTGTTCGGAATATACCGCAGCCATTGATATATGGTCTGTTGGTTGCATACTTGGAGAAATCATAACAAGACAACCACTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTAGTCACAGAGCTGATTGGTTCACCCGATGATGCTAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCTCAGTATCCAAAGCAAAACTTTTCTGCTAGATTTCCCATCATGTCTCCTGGTGCTGTTGATTTGCTAGAGAAGATGCTTATCTTTGATCCTAACAGGCGTATTACAGTTGATGAGGCATTGAGCCACCCATACATGGCACCTCTCCACGACATCAATGAGGAACCTGTTTGCACTAGACCCTTCAGTTTTGACTTTGAGCAACCGTCATTCACTGAAGAAGATATCAAGGAACTCATCTGGAGAGAATCTGTGAAGTTCAATCCTCTTCCACCAGTCTACTGA 1119 0.42 MSGVESDHNNIKGVPTHGGRYIQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAETGEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHANIMSIRDIIRPPQKENFNDVYLVSELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIITRQPLFPGKDYVHQLRLVTELIGSPDDASLGFLRSDNARRYVKQLPQYPKQNFSARFPIMSPGAVDLLEKMLIFDPNRRITVDEALSHPYMAPLHDINEEPVCTRPFSFDFEQPSFTEEDIKELIWRESVKFNPLPPVY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1941g00009 372 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1941g00009 372 Pfam Protein kinase domain 42 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1941g00009 372 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Vium1941g00009 372 FunFam Mitogen-activated protein kinase 23 132 - -
Vium1941g00009 372 CDD STKc_TEY_MAPK 31 367 - -
Vium1941g00009 372 SMART serkin_6 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1941g00009 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vium1941g00009 372 Gene3D Transferase(Phosphotransferase) domain 1 122 351 - -
Vium1941g00009 372 FunFam Mitogen-activated protein kinase 122 351 - -
Vium1941g00009 372 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium1941g00009 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 325 - -
Vium1941g00009 372 SUPERFAMILY Protein kinase-like (PK-like) 41 331 IPR011009 -
Vium1941g00009 372 Gene3D Phosphorylase Kinase; domain 1 21 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1941g00009 Vium-Chr1941 83452 88930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1941g00009 3 367 MAP Kinase Gene Family AT4G01370 85.479 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium1941g00009 Pkinase 4.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1941g00009 K20600 - gmx:100779469 744.191