Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1941g00005 ATGTCAGTGTATGACGCAGCTTTCGTCAACACGGAGCTTTCCAAACGCACTTCCATCTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCCTTGTCGGATCCCTCATCGTCATCGTCCTCTTTCTCATCTCTCTCTGCCTCACATCCCGCCGCCGCCACCACCACAAAACTCCCCTCCGCCGCCGCGCCGCCGCCATCCCTACGCCGCCCATTTCCAAGGAAATCCTGGAGATCGTTCACGTTGCCCCGCCGCCAGACACCGTCAACCTCCCGCCTCCTAAGGCGGAGCCACGCGCCGCCGCCGTACTGTACTCCAGTGGGGAGAGCAGGGGAGCGGTGAGCCTGTGCGAAACGGCGTCGTCACTGGGGAGCGGGAGTGTGGGCCCCGAAGTGTCGCATCTCGGGTGGGGGAGGTGGTTCACGCTGAGGGAACTGGAAGCTGCGACTAATGGATTGTGTGAAGAGAACGTGATTGGTGAAGGTGGCTATGGAATTGTTTATCGTGGGTTGTTACCTGATGGAAACAAGGTTGCTGTCAAGAACCTTTTGAATAATAAAGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGCCATAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGAGCTTACAGGATGCTTGTATATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCACGGCGATGTTGGAGCTGTGAGCCCTATAACCTGGGATATCCGAATGAACATTATATTGGGCACAGCAAAAGGACTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACAGAGACGTCAAATCGAGCAACATACTGCTTGATCGTCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCCAAGCTTTTGTCTGCTGATCATAGTTATGTCACTACTCGAGTTATGGGAACCTTTGGTTATGTTGCACCTGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATGTGTATAGTTTTGGAATACTTATCATGGAAATAATTACAGGAAGAAGTCCTGTTGATTACAGTAGACCACAAGGAGAGGTTAATTTGATAGAGTGGTTGAAAAGCATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAGGGCTATTAAACGGGCTCTTTTGGTTGCTCTTCGATGTGTCGACCCTGATGCTGCAAAGAGGCCTAAAATAGGCCATGTTATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATGAACGAAGGACTGAGGGAGAATCTTCCCGTTCCCACCGTGATTATCAACTGGAGCATAAAGGCTCAGGATTAGATAAAAGGCAAACAGGTGGAGAAATCAACTCTCAGAGTGAAGATGACAGTTCTACTAGTAGTAGATATCACCATCATCAGCCTACTAGATGGAGATAA 1467 0.4935 MSVYDAAFVNTELSKRTSIFGLRLWVVIGILVGSLIVIVLFLISLCLTSRRRHHHKTPLRRRAAAIPTPPISKEILEIVHVAPPPDTVNLPPPKAEPRAAAVLYSSGESRGAVSLCETASSLGSGSVGPEVSHLGWGRWFTLRELEAATNGLCEENVIGEGGYGIVYRGLLPDGNKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPITWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLSADHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKSMVGNRKSEEVVDPKIAEKPSSRAIKRALLVALRCVDPDAAKRPKIGHVIHMLEAEDLLFRDERRTEGESSRSHRDYQLEHKGSGLDKRQTGGEINSQSEDDSSTSSRYHHHQPTRWR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1941g00005 488 PANTHER OS01G0323000 PROTEIN 7 444 - -
Vium1941g00005 488 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Vium1941g00005 488 SUPERFAMILY Protein kinase-like (PK-like) 130 424 IPR011009 -
Vium1941g00005 488 Gene3D Transferase(Phosphotransferase) domain 1 228 439 - -
Vium1941g00005 488 SMART serkin_6 152 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1941g00005 488 CDD STKc_IRAK 158 424 - -
Vium1941g00005 488 MobiDBLite consensus disorder prediction 434 458 - -
Vium1941g00005 488 MobiDBLite consensus disorder prediction 434 488 - -
Vium1941g00005 488 FunFam Putative receptor-like serine/threonine-protein kinase 228 438 - -
Vium1941g00005 488 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524
Vium1941g00005 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Vium1941g00005 488 Pfam Protein kinase domain 155 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1941g00005 488 ProSiteProfiles Protein kinase domain profile. 152 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1941g00005 488 FunFam Probable serine/threonine-protein kinase At1g01540 132 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1941g00005 Vium-Chr1941 56648 60138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1941g00005 121 424 Receptor kinase-like Gene Family AT4G02010 45.779 1.01e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium1941g00005 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1941g00005 - - gmx:100777348 826.239