Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1941g00004 ATGGTGTCGGTGAACCCAAACCCCGCCCAAGGCTTTTACTTCTTCGATCCCTCCAATATGACCCTTCCCGGCGTGAATTCTCTTCCGCCGCCACCGCCGCCAACTCAGACTCCAGCTCTTTCCCCCGCCGTGGAGGATCCAAATAAGAAGATCCGGAAACCCTACACGATTACAAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAATTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACTGTTATCCAGATAAGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTTCCTCCTCCCCGGCCAAAGAGAAAAGCTACTCACCCATACCCTCAAAAGGCTCCTAAAATCACTCCTACTGCATCCCAAGTTATGGGCCCACTGCAACCTTCATCTGCTTTCATTGAACCTGCATATATTTATAGCTCGGATTCTTCATCTGTTCTTGGAACTCCAGTTACCAACATGCCTTTGACGACTTGGAACTATAATGCTAAACCACCCGTCAATGTGCCTCAAGTGACTAGAGATGACATGGGCCTGACCGGAGTGGCACAAACTATTTCTCTTAACTGTTGCTATAGCAGTAGTAATGAGAACACCCATCCAACTTGGCCAAGTAGCAAAAAGATGAATCAAGGTGGCCAGGGCAAGCCAATGAAAGTAATGCCAGATTTTGCTCAAGTCTACAGCTTCATTGGCAGTGTTTTTGATCCAAATTCGACTAATCAACTTCAGAAACTAAGTCAGATGGACCCAATAAATGTGGAAACGGTATTACTGTTGATGAGAAATCTATCGGTCAATTTAATGAGTCCAGAGTTTGAGGACCATAAAAGGCTGCTTTCATCATATGATACCGACTCTGATGAGTCGAAGCATGTTAATATTTGCAGCAAATCCCTCACTAATAAATCCGAGAGTGCTATTCTGTCTGCATAA 1005 0.4438 MVSVNPNPAQGFYFFDPSNMTLPGVNSLPPPPPPTQTPALSPAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPTASQVMGPLQPSSAFIEPAYIYSSDSSSVLGTPVTNMPLTTWNYNAKPPVNVPQVTRDDMGLTGVAQTISLNCCYSSSNENTHPTWPSSKKMNQGGQGKPMKVMPDFAQVYSFIGSVFDPNSTNQLQKLSQMDPINVETVLLLMRNLSVNLMSPEFEDHKRLLSSYDTDSDESKHVNICSKSLTNKSESAILSA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1941g00004 334 MobiDBLite consensus disorder prediction 220 235 - -
Vium1941g00004 334 SMART sant 60 108 IPR001005 -
Vium1941g00004 334 MobiDBLite consensus disorder prediction 23 53 - -
Vium1941g00004 334 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vium1941g00004 334 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vium1941g00004 334 Gene3D - 64 111 - -
Vium1941g00004 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vium1941g00004 334 CDD SANT 63 106 IPR001005 -
Vium1941g00004 334 MobiDBLite consensus disorder prediction 112 146 - -
Vium1941g00004 334 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vium1941g00004 334 MobiDBLite consensus disorder prediction 220 239 - -
Vium1941g00004 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vium1941g00004 334 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vium1941g00004 334 MobiDBLite consensus disorder prediction 24 40 - -
Vium1941g00004 334 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Vium1941g00004 334 PANTHER SWI/SNF COMPLEX-RELATED 31 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1941g00004 Vium-Chr1941 47964 54487 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1941g00004 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1941g00004 - - gmx:778090 585.874