Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1941g00003 ATGGTGTCGGTGAACCCAAACCCCGCCCAAGGCTTTTACTTCTTCGATCCCTCCAATATGACCCTTCCCGGCGTGAATTCTCTTCCGCCGCCACCGCCGCCAACTCAGACTCCAGCTCTTTCCCCCGCCGTGGAGGATCCAAATAAGAAGATCCGGAAACCCTACACGATTACAAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAATTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACTGTTATCCAGATAAGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTTCCTCCTCCCCGGCCAAAGAGAAAAGCTACTCACCCATACCCTCAAAAGGCTCCTAAAATCACTCCTACTGCATCCCAAGTTATGGGCCCACTGCAACCTTCATCTGCTTTCATTGAACCTGCATATATTTATAGCTCGGATTCTTCATCTGTTCTTGGAACTCCAGTTACCAACATGCCTTTGACGACTTGGAACTATAATGCTAAACCACCCGTCAATGTGCCTCAAGTGACTAGAGATGACATGGGCCTGACCGGAGTGGCACAAACTATTTCTCTTAACTGTTGCTATAGCAGTAGTAATGAGAACACCCATCCAACTTGGCCAAGTAGCAAAAAGATGAATCAAGGTGGCCAGGGCAAGCCAATGAAAGTAATGCCAGATTTTGCTCAAGTCTACAGCTTCATTGGCAGTGTTTTTGATCCAAATTCGACTAATCAACTTCAGAAACTAAGTCAGATGGACCCAATAAATGTGGAAACGGTATTACTGTTGATGAGAAATCTATCGGTCAATTTAATGAGTCCAGAGTTTGAGGACCATGCTGCTTTCATCATATGA 915 0.4492 MVSVNPNPAQGFYFFDPSNMTLPGVNSLPPPPPPTQTPALSPAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPTASQVMGPLQPSSAFIEPAYIYSSDSSSVLGTPVTNMPLTTWNYNAKPPVNVPQVTRDDMGLTGVAQTISLNCCYSSSNENTHPTWPSSKKMNQGGQGKPMKVMPDFAQVYSFIGSVFDPNSTNQLQKLSQMDPINVETVLLLMRNLSVNLMSPEFEDHAAFII 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1941g00003 304 MobiDBLite consensus disorder prediction 220 235 - -
Vium1941g00003 304 SMART sant 60 108 IPR001005 -
Vium1941g00003 304 MobiDBLite consensus disorder prediction 23 53 - -
Vium1941g00003 304 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vium1941g00003 304 Gene3D - 64 111 - -
Vium1941g00003 304 PANTHER SWI/SNF COMPLEX-RELATED 31 292 - -
Vium1941g00003 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vium1941g00003 304 CDD SANT 63 106 IPR001005 -
Vium1941g00003 304 MobiDBLite consensus disorder prediction 112 146 - -
Vium1941g00003 304 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vium1941g00003 304 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vium1941g00003 304 MobiDBLite consensus disorder prediction 220 239 - -
Vium1941g00003 304 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vium1941g00003 304 MobiDBLite consensus disorder prediction 24 40 - -
Vium1941g00003 304 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Vium1941g00003 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1941g00003 Vium-Chr1941 47963 54487 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1941g00003 Myb_DNA-binding 2.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1941g00003 - - gmx:778090 526.939