Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1940g00009 ATGGCCCTTGATGCTGCCCGAGGAATGAACTATCTGCACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTGAAGGTATGTGATTTTGGCTTATCACGAATGAAGCATAGCACCTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAATGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGCGACGTTTTCAGCTATGGCGTCATATTGTGGGAGCTCTCTACGTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTAGACATTCCAGATGATGTAGACCCTGTCATTGCAGATATTATCAGACAATGCTGGCAGACAGATCCAAAGCTGAGGCCAACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGCTTCTCAAGTGCCTAGATCAAGTGCTCAGTCATCACGAGTTACTGAATTTCCCGCAGGATAG 543 0.4659 MALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPVIADIIRQCWQTDPKLRPTFAEIMAALKPLQRPITASQVPRSSAQSSRVTEFPAG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1940g00009 180 MobiDBLite consensus disorder prediction 161 180 - -
Vium1940g00009 180 ProSiteProfiles Protein kinase domain profile. 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1940g00009 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Vium1940g00009 180 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 161 - -
Vium1940g00009 180 SUPERFAMILY Protein kinase-like (PK-like) 1 164 IPR011009 -
Vium1940g00009 180 PRINTS Tyrosine kinase catalytic domain signature 13 31 IPR001245 GO:0004672|GO:0006468
Vium1940g00009 180 PRINTS Tyrosine kinase catalytic domain signature 79 101 IPR001245 GO:0004672|GO:0006468
Vium1940g00009 180 PRINTS Tyrosine kinase catalytic domain signature 60 70 IPR001245 GO:0004672|GO:0006468
Vium1940g00009 180 PRINTS Tyrosine kinase catalytic domain signature 123 145 IPR001245 GO:0004672|GO:0006468
Vium1940g00009 180 Pfam Protein tyrosine and serine/threonine kinase 1 152 IPR001245 GO:0004672|GO:0006468
Vium1940g00009 180 SMART serkin_6 1 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1940g00009 180 Gene3D Transferase(Phosphotransferase) domain 1 1 163 - -
Vium1940g00009 180 FunFam PAS domain-containing protein tyrosine kinase family protein 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1940g00009 Vium-Chr1940 42463 45538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1940g00009 1 172 MAP Kinase Kinase Kinase AT1G73660 83.721 3.32e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium1940g00009 PK_Tyr_Ser-Thr 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1940g00009 - - vum:124828513 353.599