Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1940g00008 ATGCTTCATATTCCACAAGCAAATATTAAAGATGAAAATAAACAACCAAGTGTGCAGCAAGAAATTAAGATTGATGACAACCTAGTTCCTGCTCGATTTTTGCCTCCTTTGCCTTACCACAAAATTCTTCGCAAAGCAGCTCCCGGCAGTCATCTAGATTCTAAGCCTGTAGATGGCTTAGGAATTGGTCTTCCCCTTGATACAGGGGAAACTGTTGGACAGAACATACCATCTCAGGCAGAAGCAGCTCGGGTAAAGTACGGGAAAAATGTCCCAGTGGCAGCGGCTGCAGCTGCTGCAGCTGCTGTTGTTGCATCTTCTATGGTAGTTGCAGCGACAAAATCAAACACTGACTCTAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAGTATGAGCAGGACAGTCGAAGTGATGGGGATACAGAGGGTGGTGGTTCTGAGTCAAAGGGTAGTGGTGATGGAGAGCCTAATCCTTTAGGAGAAAACTCGGAAGGTGAGAGAAAATCTGACAGATCAGTAAGTAATGACAGCAACAAATCTGATTCTGCACTGGATGAGGTTGCCGAGTATGACATTCCATGGGAGGAAATCAAAATGGGAGAGCGTATTGGACTAGGATCATATGGGGAAGTTTACCGTGGTGAATGGCATGGAACTGAAGTTGCCGTAAAAAAGTTCTTATATCAAGATATCTCTGGTGAATTACTTGAAGAGTTCAAAAGTGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGGCCTCCAAATCTTTCAATTGTTTCTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCCCTTGATGCTGCCCGAGGAATGAACTATCTGCACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGATAAAAACTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGAATGAAGCATAGCACCTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAATGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGCGACGTTTTCAGCTATGGCGTCATATTGTGGGAGCTCTCTACGTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTAGACATTCCAGATGATGTAGACCCTGTCATTGCAGATATTATCAGACAATGCTGGCAGACAGATCCAAAGCTGAGGCCAACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGCTTCTCAAGTGCCTAGATCAAGTGCTCAGTCATCACGAGTTACTGAATTTCCCGCAGGATAG 1479 0.449 MLHIPQANIKDENKQPSVQQEIKIDDNLVPARFLPPLPYHKILRKAAPGSHLDSKPVDGLGIGLPLDTGETVGQNIPSQAEAARVKYGKNVPVAAAAAAAAAVVASSMVVAATKSNTDSNLEIPVAAAATATAAAVVATTAAVSKYEQDSRSDGDTEGGGSESKGSGDGEPNPLGENSEGERKSDRSVSNDSNKSDSALDEVAEYDIPWEEIKMGERIGLGSYGEVYRGEWHGTEVAVKKFLYQDISGELLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVSEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPVIADIIRQCWQTDPKLRPTFAEIMAALKPLQRPITASQVPRSSAQSSRVTEFPAG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1940g00008 492 Gene3D Phosphorylase Kinase; domain 1 205 289 - -
Vium1940g00008 492 MobiDBLite consensus disorder prediction 144 199 - -
Vium1940g00008 492 Pfam Protein tyrosine and serine/threonine kinase 212 464 IPR001245 GO:0004672|GO:0006468
Vium1940g00008 492 ProSitePatterns Protein kinases ATP-binding region signature. 218 240 IPR017441 GO:0005524
Vium1940g00008 492 PRINTS Tyrosine kinase catalytic domain signature 372 382 IPR001245 GO:0004672|GO:0006468
Vium1940g00008 492 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672|GO:0006468
Vium1940g00008 492 PRINTS Tyrosine kinase catalytic domain signature 325 343 IPR001245 GO:0004672|GO:0006468
Vium1940g00008 492 PRINTS Tyrosine kinase catalytic domain signature 435 457 IPR001245 GO:0004672|GO:0006468
Vium1940g00008 492 PRINTS Tyrosine kinase catalytic domain signature 286 299 IPR001245 GO:0004672|GO:0006468
Vium1940g00008 492 SUPERFAMILY Protein kinase-like (PK-like) 199 463 IPR011009 -
Vium1940g00008 492 FunFam Serine/threonine-protein kinase isoform 1 203 290 - -
Vium1940g00008 492 Gene3D Transferase(Phosphotransferase) domain 1 291 475 - -
Vium1940g00008 492 SMART serkin_6 212 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1940g00008 492 MobiDBLite consensus disorder prediction 473 492 - -
Vium1940g00008 492 ProSiteProfiles Protein kinase domain profile. 212 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1940g00008 492 CDD STKc_MAP3K-like 218 464 - -
Vium1940g00008 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672|GO:0006468
Vium1940g00008 492 FunFam Serine/threonine-protein kinase CTR1 291 474 - -
Vium1940g00008 492 MobiDBLite consensus disorder prediction 175 190 - -
Vium1940g00008 492 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 119 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1940g00008 Vium-Chr1940 35149 42066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1940g00008 10 486 MAP Kinase Kinase Kinase AT1G73660 66.527 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium1940g00008 PK_Tyr_Ser-Thr 2.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1940g00008 - - vum:124828513 892.493