LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1940g00008	ATGCTTCATATTCCACAAGCAAATATTAAAGATGAAAATAAACAACCAAGTGTGCAGCAAGAAATTAAGATTGATGACAACCTAGTTCCTGCTCGATTTTTGCCTCCTTTGCCTTACCACAAAATTCTTCGCAAAGCAGCTCCCGGCAGTCATCTAGATTCTAAGCCTGTAGATGGCTTAGGAATTGGTCTTCCCCTTGATACAGGGGAAACTGTTGGACAGAACATACCATCTCAGGCAGAAGCAGCTCGGGTAAAGTACGGGAAAAATGTCCCAGTGGCAGCGGCTGCAGCTGCTGCAGCTGCTGTTGTTGCATCTTCTATGGTAGTTGCAGCGACAAAATCAAACACTGACTCTAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAGTATGAGCAGGACAGTCGAAGTGATGGGGATACAGAGGGTGGTGGTTCTGAGTCAAAGGGTAGTGGTGATGGAGAGCCTAATCCTTTAGGAGAAAACTCGGAAGGTGAGAGAAAATCTGACAGATCAGTAAGTAATGACAGCAACAAATCTGATTCTGCACTGGATGAGGTTGCCGAGTATGACATTCCATGGGAGGAAATCAAAATGGGAGAGCGTATTGGACTAGGATCATATGGGGAAGTTTACCGTGGTGAATGGCATGGAACTGAAGTTGCCGTAAAAAAGTTCTTATATCAAGATATCTCTGGTGAATTACTTGAAGAGTTCAAAAGTGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGGCCTCCAAATCTTTCAATTGTTTCTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCCCTTGATGCTGCCCGAGGAATGAACTATCTGCACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGATAAAAACTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGAATGAAGCATAGCACCTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAATGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGCGACGTTTTCAGCTATGGCGTCATATTGTGGGAGCTCTCTACGTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTAGACATTCCAGATGATGTAGACCCTGTCATTGCAGATATTATCAGACAATGCTGGCAGACAGATCCAAAGCTGAGGCCAACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGCTTCTCAAGTGCCTAGATCAAGTGCTCAGTCATCACGAGTTACTGAATTTCCCGCAGGATAG	1479	0.449	MLHIPQANIKDENKQPSVQQEIKIDDNLVPARFLPPLPYHKILRKAAPGSHLDSKPVDGLGIGLPLDTGETVGQNIPSQAEAARVKYGKNVPVAAAAAAAAAVVASSMVVAATKSNTDSNLEIPVAAAATATAAAVVATTAAVSKYEQDSRSDGDTEGGGSESKGSGDGEPNPLGENSEGERKSDRSVSNDSNKSDSALDEVAEYDIPWEEIKMGERIGLGSYGEVYRGEWHGTEVAVKKFLYQDISGELLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVSEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPVIADIIRQCWQTDPKLRPTFAEIMAALKPLQRPITASQVPRSSAQSSRVTEFPAG	492

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium1940g00008	492	Gene3D	Phosphorylase Kinase; domain 1	205	289	-	-
Vium1940g00008	492	MobiDBLite	consensus disorder prediction	144	199	-	-
Vium1940g00008	492	Pfam	Protein tyrosine and serine/threonine kinase	212	464	IPR001245	GO:0004672\|GO:0006468
Vium1940g00008	492	ProSitePatterns	Protein kinases ATP-binding region signature.	218	240	IPR017441	GO:0005524
Vium1940g00008	492	PRINTS	Tyrosine kinase catalytic domain signature	372	382	IPR001245	GO:0004672\|GO:0006468
Vium1940g00008	492	PRINTS	Tyrosine kinase catalytic domain signature	391	413	IPR001245	GO:0004672\|GO:0006468
Vium1940g00008	492	PRINTS	Tyrosine kinase catalytic domain signature	325	343	IPR001245	GO:0004672\|GO:0006468
Vium1940g00008	492	PRINTS	Tyrosine kinase catalytic domain signature	435	457	IPR001245	GO:0004672\|GO:0006468
Vium1940g00008	492	PRINTS	Tyrosine kinase catalytic domain signature	286	299	IPR001245	GO:0004672\|GO:0006468
Vium1940g00008	492	SUPERFAMILY	Protein kinase-like (PK-like)	199	463	IPR011009	-

Showing 1 to 10 of 20 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1940g00008	Vium-Chr1940	35149	42066	Tandem

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1940g00008	10	486	MAP Kinase Kinase Kinase	AT1G73660	66.527	0.0	567

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Vium1940g00008		PK_Tyr_Ser-Thr	2.6e-67	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1940g00008	-		-	vum:124828513	892.493

Showing 1 to 1 of 1 entries

Previous1Next