Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1940g00006 ATGGCTTCGAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGCGATTATGACGAGGAGGTCGAAACGGCGGTTGGTGATTCTGCCAATCAAGCAGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGATTCCGATGGCCAAAAACGTGTTGTCAGGTCGGCTAAAGACAAGCGTTTCGAGGAGATGGTTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCTAGAGAATTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGCATCACTGAGTCGGTGAAGGTCCCCAACCTTTACATCAAGGCACTTGTGATGTTGGAAGATTTCTTGACTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGTAGTAGCAATGCTAAAGCCTTGAATTCAATGAAGCAGAAGCTGAAGAAGAATAACAAGCAGTACGAGGAGTTGATTAATAAGTGCAGGGAGAACCCTGAGAGTGAGGAGGAGAAAGAGGAAGAGGAGAGTGAGGAAGATTATGAAAGTGATGATGAGATTATTGATCCAGAGCAGCTTCGAAAACCAGAAGCCAAATCGGATTCTGAAGCTTCTCAATATGACGATGAGAAGCCAGATGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGACTTTTAGATAGACAGTTCATGAAAAACCCTAGTGAGATCACTTGGGACGCTGTTAACAAGAAGTTTAAAGAGGTTGTGTCTGCTAGAGGAAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTCACTTTCCTAACAAAAGTTGCTAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTGAATGGATACATGCCGATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTCCAGTACCCAAACATAGTGGTCGATGATTCTGTGGAACCAGATGAGAATGAAACTCAGAAAGGTACTGACTATAATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCTTGCAATGCATAGATCCTCATACACGTGACTATGTGGAGAGACTTAGGGATGAACCCACGTTTCTGGTTCTTGCTCAGAATGTTCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCATCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAGGAGGTTTATGATGCCATGAGAAAATTGACTGAGTTGACCGAAGCTGGGGAGAACGGAGGGGATGCAAGTGAGGAGTCTAAAGAATTTGAACCAAGAGTTCCAACTGCATTTGTTGCTACCCCAGAGGTTGTGGCACGAAAACCCACCTTCCCTGAGTATAACAGGACCTTGATGGATGTATTGGTATCTTTGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCAGCATGCACTTCTTGATGAGTTCTCAGTTGCCCGTGATCTCCTGCTTATGAGCCATTTGCAAGATAGTGTTCAGCATTTAGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGCGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGTGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAGCAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCACATCAATCTTGAGCTACTGGAGGCCGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCCAACTTGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAAACTTTCCGACGCTTGCTTGAAGTAAGCGAGAAACAAACATTTACTGGTCCACCGGAAAATGTGAGAGACCATGTTATGGCTGCTACAAGGGTTCTTCGCAAGGGAGACTTCCAGAAGGCGTATGACATTATTGTGACTCTTGATGTATGGAAATTTGTGAAAAATCGAGACAGTGTGCTTGAAATGTTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCGTCTTATGAATCCTTGTGCTTAGATCAGCTCACAAAATTTTTTGATCTCTCTGTTTCTCGTACTCACAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTTATGCAAGCTGGGACCAGCCAACCGAATGCATTCTTTTCCAAGATGTCGAACACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACCGAGAAGTTATCTATTCTTGCGGAGAATAATGAAAAAGCAACAGAAGCAAGGATAGGTGGTAGTGGACTAGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTACGCAGCCGCCGCAGCCGGCAGTGGAACAACATCTTCAGGTGGTAGATGGCAAGACCTGTCCCTTTCTCAGCCAAGATCAGGCAGTGGGCGTACCGGGTATGGTGGTGGTGGTGGAAGACCAATGGCATTAGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAACAGGTGCTTCATATGGAGGTTCAGGGAGGACTGCTCAAAGGGGTTCAGGATTAAGGGGATCCCATGGCGATGTGTCTACTCGCATGGTTAGCCTCAAGGGAGCAGCTCGTGCTTGA 2790 0.4548 MASRFWTQGGSDSEEEESDYDEEVETAVGDSANQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMVSTVDQMKNAMKINDWVSLLENFDKINKQLEKVMRITESVKVPNLYIKALVMLEDFLTQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESEEDYESDDEIIDPEQLRKPEAKSDSEASQYDDEKPDEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVSARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGYMPINVWKKCVQNMLIILDILVQYPNIVVDDSVEPDENETQKGTDYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEAGENGGDASEESKEFEPRVPTAFVATPEVVARKPTFPEYNRTLMDVLVSLIYKYGDERTKARAMLCDIYQHALLDEFSVARDLLLMSHLQDSVQHLDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNLAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLRKGDFQKAYDIIVTLDVWKFVKNRDSVLEMLKDKIKEEALRTYLFTFSSSYESLCLDQLTKFFDLSVSRTHSIVSRMMINEELYASWDQPTECILFQDVEHSRLQALAFQLTEKLSILAENNEKATEARIGGSGLDLPLRRRDGQDYAAAAAGSGTTSSGGRWQDLSLSQPRSGSGRTGYGGGGGRPMALGQAAGSGYSRGRGTGASYGGSGRTAQRGSGLRGSHGDVSTRMVSLKGAARA 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1940g00006 929 MobiDBLite consensus disorder prediction 839 864 - -
Vium1940g00006 929 Coils Coil 144 171 - -
Vium1940g00006 929 MobiDBLite consensus disorder prediction 133 228 - -
Vium1940g00006 929 MobiDBLite consensus disorder prediction 30 44 - -
Vium1940g00006 929 MobiDBLite consensus disorder prediction 194 228 - -
Vium1940g00006 929 MobiDBLite consensus disorder prediction 1 58 - -
Vium1940g00006 929 MobiDBLite consensus disorder prediction 836 929 - -
Vium1940g00006 929 MobiDBLite consensus disorder prediction 134 154 - -
Vium1940g00006 929 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 923 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vium1940g00006 929 MobiDBLite consensus disorder prediction 175 193 - -
Vium1940g00006 929 SUPERFAMILY "Winged helix" DNA-binding domain 714 788 IPR036390 -
Vium1940g00006 929 MobiDBLite consensus disorder prediction 155 174 - -
Vium1940g00006 929 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vium1940g00006 929 MobiDBLite consensus disorder prediction 12 26 - -
Vium1940g00006 929 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
Vium1940g00006 929 Pfam PCI domain 657 785 IPR000717 -
Vium1940g00006 929 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 867 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vium1940g00006 929 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1940g00006 Vium-Chr1940 27697 31969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1940g00006 1 929 Eukaryotic Initiation Factors Gene Family AT3G56150 68.240 0.0 1195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1940g00006 K03252 - gmx:100779751 1568.13