Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1939g00001 ATGAATGATTCCACGGCGAAGAATTTGGCTATCACGGAGAGGAAGGTGCAGCAGAAGCCGGGTGGTTGTGTTGGCATTTTCTTTCAGCTCATTGATTGGAAGAGGAAGCTCTCCAAGAAGAAGCTCTTCTCCAAGAAGCTTCTTCCTCCAGCTCGTGCGAAAAAGTTCAAGGGGGATGAAAAGATGCCAAATTCCAAGATTCACTTGATTGCTAATGAGAACAGTGGAGGTTTCCCAAGTGCTAACAAAAAAGGTGGGAATCATGGCTTAGATGTAGAACAGAAGAGTGAAATGCGAGTTCCGAGTCTGGTAGCCAGGTTGATGGGTCTAGAATCTATTCCGACTGCTCAGCGAGATAAGTCCAAGAAAGCCTTGTGTGGTGATGGGAAGAATGAGTCTTTGGGTGGTGACCATGGCGAGTTGGATAGGCAAGGCATGGGTTTGGAAATGGGAGTTGTGAAGCATGATTCAAGACCTCAGAAGCTTCAGAAAACCGGGTCCTATGAGAGAAGGGCAGTGACTAGGTTTGGAGCTGAGGCTTTCCAAATTAAGAGTGTATTATCACGAGGAAGAAAATATCATCACCATCATCATCATCATCCAAAGCTTGCTTCTTCTTTGAAGAGTCCGAGAATTCCTTCCGGAAAGAGTGCTTCTCGAAGCTCTAGGTTAATAGGAGCAGCTACTAAAATTTTGGAACCTGGACTGCAAAGCAGAAGTAGGGCCAAAGGTTCTCTTACATATCCTGCTTCCATGTACCCTCCCAAGACTGGTATTGTGACCAATGATGTGCAAAATCAATCTTGTTATGAAGCTGGCTCATGCAAGCAATTGATGGAGCAGACCTCTTGCAAAAACTGTGGTAATCTGCTAGACGTAGTTGACTGCAAGCTTGAGGTTGGGGGACAGCCACTGGATCCTCCACCCGTTGTTTCTGATGTGATCACAGCTACCTCTATGGAATCATCAGAGAAGAAGGGAAAGTCATTAACTTCCCTTGGACATGACAGAGATGTAGTTCTTCTGAGAAGCCAGGAAAAGTTCATATCTCTTGATACTGAAGAGAAGGGGAAAAATAATGCACATAAGTCATGGAATGAGCCCACTGTTAGAAGAATGTCAATGCCCCATGATTGTCTACCTAAATGGAATTCATCTTGCCAACCATCAAGGACCCTGGAGGATGATGCATCTTCTTTTCGCTCAAAACACAAAATTCAAACACAAGAACAGATGTTAAGCAGTGAAAGATATTCATCTGGATCTACAATGAGCGATATGCAAGTAAAAGGGGTATCATCATCTACGAGTGCTATGAATGGTGCTAAGGACTTTGTTTCTATGAATAGAAGTCTTACTGGTCGAACAAGGACAAGATCACCTACCAAAGCTGACAGTTCTAGATTTGACCTAGAGAGAAAACCTTATAGTCGACAGCATAATTCTTTGTCTCACGTACGGACATTAGAGAGAAAAAGAAGAATCCCAAATGCCACTCAACTAGAAGGCACAGGTTCTGTTTATTCAGTTGGTGCAAAACAGAGAAATCTCCATTCTAATGGATTGGGTGGCAAAAGAAGGGACTCCAATGCTTCCTCCTTGAACAATTCCATTATAAGAAATAAGCAAGTTGCTCAAGGAGAAAGAATTATTAAGGTTAAGGACAACAAGATCAATGATGTAGTGTCATTTACATTTAATTCCCCCCTGAAGCAAAAGATAGGAGTAACTGTTGACAGGGAAGAGACAAGCACTGACAATGAGAGTATTAAAAGGCCTAAACCATTGAGAGTTGATGCTTTAGGTGTCTTTCTAGAACAAAAATTGAAGGAGTTAACCTCTCAAAGAGACGAAGAATTGGCTACAGGTGTTCCGCCTAAAAAATCAAGTGCCATGATTCTTCAAGAGCTGATATCTGCTTTAAGTTCAGAGCATTTGATCTGTCATGATGGTCATCCTGTGTTTAATGAAAATGTTGGTTTGCATTATGGGGAAAAACAAGAAAGGTTATTAGGAACCTCTTGCAATGGTAATCATCTCAGTCCCGGATCTGTTTTGGAAGCTTCTTTTTCTTCCAGTAGTCTGGATGAAAGCTCAGGGCATTGTTTTCACCCTGATTCCATGAATCACTCTTGTTATGGTCAACTAGAACATGAAGCTGAACTTTCAGATTCTGCAACATCCTTTACCAAAGGGAGGATAGGTGAGATACTGAGTGATCTTGTCAGCCAACTTCCCAGGGCATTGGAAAGTTTGCACACTTATGGGACAGAATTAACAATAAGCAAGCTTAACCATATGAAGGATATTCTCTTGCATGCTGAGTTGGTGCTTGGAATTACAACTGATCGCAGACAGGATGAAGGGCCACAACTTATAATTCATCGGTTTCTCGTTGATGATCTTGAGAGCATGACGAGTGATACCATGTGGACAGATGTGAGTTGTGAGGATTCTAAACAGAGAAAGGAACTAAAGGGCTTTCTCCTTGACTGTGTTGTGGAATATCTAGAATCAAACTGCAGCCTTTATTTTAACTCTGGATTCAGGGCATGGACAAAGTTACCTTTATGCATGAGAGCTGAGATGTTGGCCAAAGAGGTGAAGAGGGAGATCAACAAATGGTTATCTATGGTTGGGATGGTACCTGATGAAATAATAGAATGGGAAATGAGCCACTCCTTGGGGAAATGGACTGACTTTGGTATTGAAGCATGTGAGGCTGGTGTTGATATAGATGGGGATATACTTCAAATTTTGGTTGATGAAGTTGTTGAAGACCTTGTAGGTTTCACTCATGGCTCCATCACCTTCTAA 2817 0.4214 MNDSTAKNLAITERKVQQKPGGCVGIFFQLIDWKRKLSKKKLFSKKLLPPARAKKFKGDEKMPNSKIHLIANENSGGFPSANKKGGNHGLDVEQKSEMRVPSLVARLMGLESIPTAQRDKSKKALCGDGKNESLGGDHGELDRQGMGLEMGVVKHDSRPQKLQKTGSYERRAVTRFGAEAFQIKSVLSRGRKYHHHHHHHPKLASSLKSPRIPSGKSASRSSRLIGAATKILEPGLQSRSRAKGSLTYPASMYPPKTGIVTNDVQNQSCYEAGSCKQLMEQTSCKNCGNLLDVVDCKLEVGGQPLDPPPVVSDVITATSMESSEKKGKSLTSLGHDRDVVLLRSQEKFISLDTEEKGKNNAHKSWNEPTVRRMSMPHDCLPKWNSSCQPSRTLEDDASSFRSKHKIQTQEQMLSSERYSSGSTMSDMQVKGVSSSTSAMNGAKDFVSMNRSLTGRTRTRSPTKADSSRFDLERKPYSRQHNSLSHVRTLERKRRIPNATQLEGTGSVYSVGAKQRNLHSNGLGGKRRDSNASSLNNSIIRNKQVAQGERIIKVKDNKINDVVSFTFNSPLKQKIGVTVDREETSTDNESIKRPKPLRVDALGVFLEQKLKELTSQRDEELATGVPPKKSSAMILQELISALSSEHLICHDGHPVFNENVGLHYGEKQERLLGTSCNGNHLSPGSVLEASFSSSSLDESSGHCFHPDSMNHSCYGQLEHEAELSDSATSFTKGRIGEILSDLVSQLPRALESLHTYGTELTISKLNHMKDILLHAELVLGITTDRRQDEGPQLIIHRFLVDDLESMTSDTMWTDVSCEDSKQRKELKGFLLDCVVEYLESNCSLYFNSGFRAWTKLPLCMRAEMLAKEVKREINKWLSMVGMVPDEIIEWEMSHSLGKWTDFGIEACEAGVDIDGDILQILVDEVVEDLVGFTHGSITF 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1939g00001 938 MobiDBLite consensus disorder prediction 461 487 - -
Vium1939g00001 938 MobiDBLite consensus disorder prediction 404 460 - -
Vium1939g00001 938 MobiDBLite consensus disorder prediction 119 142 - -
Vium1939g00001 938 MobiDBLite consensus disorder prediction 210 224 - -
Vium1939g00001 938 Pfam DUF761-associated sequence motif 93 119 IPR032795 -
Vium1939g00001 938 MobiDBLite consensus disorder prediction 390 487 - -
Vium1939g00001 938 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 8 927 - -
Vium1939g00001 938 MobiDBLite consensus disorder prediction 189 225 - -
Vium1939g00001 938 MobiDBLite consensus disorder prediction 515 535 - -
Vium1939g00001 938 MobiDBLite consensus disorder prediction 189 205 - -
Vium1939g00001 938 Pfam Domain of unknown function (DUF4378) 765 923 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1939g00001 Vium-Chr1939 8278 13126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1939g00001 1 928 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 31.606 3.82e-83 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1939g00001 - - gmx:100813026 1488.01