Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1935g00021 ATGGCGTTTGAGCAAACCTCTGTTCCTGGCGGCGATGTTGTGCGGCCACTGAATTCAGTAGCGCGGAGTGTAGCGGAAGAGCCTCTCGTTTTGCCGGTGTCTACGGCGGTTCCTGGCGCGGTGCCGATTTTCTATCCTGCGTCTGTCTCTGATGCTGGCTTGGTTGGAATGGGGTATGGGAATGTGACTTCGGGAGGTGGCGGTGGTGCTGCCACATGGTGTGTTCGCCCCGCTGTGCCAGTTCATAATCACAATCCCTCTGTGAATCCTGCTGTTGGGTTTGTTCATGCTCCTAGTTTTCCCAATAGGGTTGGTGCTGTTGGTGGCAATGCTGTTGATGTTTCGAGTAGTTTTGCGGCTGCTACTCATGGGTTTCCTATGAATTTGGGGGGTAACTGGGTTGCATCGGGTAATGGCCTGGATAGTATTAATAGTAGTGATGTTAATAATAATAATAATAATAATAATAATAATAACAGCAACAACAGTGCTGTTCCAGGGAACAGCAGAGTCATTAGCAATTATGGTGATAATGTGTGTAATAATGGGGTTGGTTCCATTTCCAATACACCTTCAAGCCAGCGGACTGATCAGGCGAATGAGGAGGGTGGGGATGATTCGATTTCAGGGCGGAAAATGAAGTTGATGTGCAGTTATGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGGATGTTGAGATATGTTGGAGGGCAGACAAGGATCATAAGTGTTAAGAGAGATGTGAGTTTTAATGATTTGGTGCAGAAGATGGTTAGTACATTTGGGCAGCATGTGGTTATCAAATATCAGCTTCCTGATGAGGATCTGGATGCATTGGTTTCGGTTTCCTGCCCTGATGATCTGGAGAATATGATGGAGGAGTATGAGAGGTTGATTGAGAGGTCTCCTGACGGTTCTCCCAAGTTAAGGGTCTTTCTTCTTTCTTCTTCAGAACTTGATCCTTCTGGTGTAGCACAGTTTGTAAATTTGCATGATGGTGGACTGAAATATGTTGAAGCTGTGAATGGAATTGCTGATGGGATTGGTGGCAAACTAACAAGGAAAGCGAGTTATACAAGCGCAGTATCTACCCAGAATTCTGATTTTAGCGGGATAGATGCTCTTGATAGCTTGAATGCTGCTCAAGGGGATGTAAGTGGGGTACCTGTACCTATGCCCAGTTCTTTATCACCTGTGGGGAACGTGGCTGCTTCTCATGATGGTTCCTCAAATTCTGTGGTTCCTGAGCCTGGTACATCTTACACAGAGGCCTCTGCAGTTCCACTGGGCATTCATGTAAGTAATTCTGGCCCAACTCACATTCCACCTCTCCAGAATGAGGTTGAGTTAGAAAAGTCTGTACCTGTTACTTTTTCTCAGACTCAATTTGGGTTACAACAATCTGGTTTGGAAATTCCACCATCTGCACCTTTGCAAACTTCTTTTGATCATCGCCAGGAGGTTATGAACCATGCAGATTATGTCCAGCTGCCTCCCCATATGGGATTCCTGAATCCTCAATTTCTAGGTAAGCCTGGCTCCATCTACACCCAACATCAATTTCATGATCATACTTCTCGTTTTGGGTCCCATCAGGTAATCCCTGCAATGCAAATGGCCATGACTCAGCCATTTTCTCATGCTGCTTTAAGACCTAGTGTTATTCAACCACAACCATTCATGCAACCTCAGCAAAACCTTTTGGACCAATATAATGATGAAAATGCTTCAGGGCTAAGGATTCACCAGGTTCCTGCTGAGCAAAGTTACAAAACATTTCAGGTTCAAGTCCCTTTTGGAGGTAATTATGGCTGGGTCCAGGTTCCTTCTGCAGAGCATGTGATCTTTTCTGATGCATTTGTACCTCAACAACCAATGATGATCCCTGAGAAACTCCAACGAGTGGAGGACTGTTATATGTGTCAGAAAAAGCTGCCTCATGCACATTCAGATCCTGTGGTTCAGGATCAGCGAAATAGCTGTGCTGGTCCAATTTCTGATTCAATCCCAAGTTTCTATAGTCTCCCTACGGAGGACAATTCTAGGGCTCAAGCAACAAATATGATTTTGGTGTCTGCACCAATGAAGGATGACAATGTTGAACAAGCAGTTGTGACAAGACCCAAGGTCCATAGCAAATTGGATACTCCAGCTGGAGCAGCTTGTACAGACACAACTGGTCTTTCTCTGGAGCTTGAAAGTGAGACGGCTTTTATACAAAGGCTGGACAGGTCTGATCATCCCAGGAATGCAGTTATCCCGGAAGCAGTTGTAAGAACAGGAGAAAAACCGTTGCCAAGTGATGGGCTGATGGGAACAGCACCGCATTCTTATCGAGATGATATCACCCGCCAGCATATGGTGCCACTTCAAAGCAGGTCTAAAGAGGATGCTCTTGTGAATAAACCTGTTGCTAATGATATACCTTTAGTTGGTGGCACATCTGTTGAAAATTCTGACTGTGTGGTTCAAGAATGTCCAACAGAATATACAAATGAACTTCCTAGCACTACTTCAAAAGCAGATGCCATGGAGAATTGGATAGCACAAGATCTTCTCAAACCTATTGATGGAAGAATAGACAACCTGAAAATAGGTAATCCTGAAAATTTTCTAAATAATGATAAATTTGATTACAGCACTCAACATGTTGCAGAGAAGAAAGGGGTCCCTCTAGATAACAAAATTGGGAAGTCAAAGTTGATCACTGATGCTGATCAAATTAATATGATAGATATTCTTCCTAGTTCTACTGTGGAAATTTCATATGGGAATAATTCCAGGCCAGTGGAATATAATGAGGTTATACAAACCCCTGTTTGGGGCATACCTGGATCAAATCCTCAGCCAAAGAGTGGAAACCATCACAGGGAGGATGCAGTTTTATCTTCAGTTCCTCCATCTGCTAGATTTGGAGAGGTGAAGGATTCTTCAAACTCACTTTTTAGCAATCAAGATCTATGGAATATACACAGTTCATACTTTCCACCTCCGAGACCTAACAAAGTTGCATTGAAGAAAGAAACCTATTCAAATATGGATCAACTTGGTGAGAATCTTGGCATCAATGGGGAACAAAATTTAGAAGCTCAATTAGACAATGGCCTCTATCAAACACTCAAACAGAATTTAACTTTGGAAGAAGCTCGATCTGCCGCCAAGGTCTCATCAGAAGACCGACAACTTCAAGCCGTTGCTGAAGGTTTAGCTGCTTCCGTTCTGCACTCAAGCACTTCTTCAAATCTTGATTTGAATGCCAAAGATGTGCCCCATCATGAGGACATTGGCGATGGAGATGTTCAAAATAATCTAATAGATATACAGCATAAAGATAAAATTCAGGATCTCAAAAGCAAGCTCCCAGAGAAATTAAATTTTGGCTTTCCAGCATCAGATGTTGGAGCTTTGCAGATTATAAAAAATTGTGACCTTGAAGAGCTGATAGAGTTGGGTTCTGGGACCTTTGGTACTGTATATCATGGAAAATGGAGGGGCACTGATGTGGCAATAAAGCGGATTAATGATAGGTGTTTTGCAGGAAAGCATTCGGAGCAAGAGCGCCTGAGAGCAGACTTTTGGAATGAGGCAATCAAGCTTGCTGACTTGCATCATCCAAATGTGGTAGCATTCTATGGTGTTGTGCTTGATGGCCCCGGAGGTTCTGTGGCAACAGTGACGGAGTATATGGTTAATGGTTCTCTAAGAAATGCATTGCAGAAGAATGGGAGGAATCTTGACAAGCGCAAGCGGCTGTTGATTGCGATGGATGTGGCCTTTGGCATGGAGTACTTGCATGGAAAAAATATAGTACACTTTGACTTGAAAAGTGACAACTTGCTCGTGAATCTCCGAGATCCACATCGTCCAATATGCAAGGTTGGTGACTTGGGTCTGTCCAAAGTAAAATGCCAGACTTTAATATCCGGCGGAGTTAGAGGAACTCTACCTTGGATGGCCCCAGAACTGCTGAATGGGAGCAGTAGTCTTGTATCGGAGAAGGTTGATGTGTTTTCGTTTGGTATTGTTATGTGGGAACTGCTCACGGGAGAAGAGCCGTATGCTGATTTGCACTATGGGGCCATTATAGGTGGTATAGTAAACAACACTTTAAGACCTCCAGTTCCAGAATCTTGCGATCCTGAATGGAGACTGCTAATGGAGATGTGCTGGTCATCAGAACCATCAGAAAGACCTTCCTTCACTGAGATTGCCAATGGATTACGTTCCATGGCAACCAAGATTTCTCCTAAAGGACAAAATCAACAGCAGCAACCTGCCTCATCGCTGAGTCAAGCGCAGAAATAA 4305 0.4388 MAFEQTSVPGGDVVRPLNSVARSVAEEPLVLPVSTAVPGAVPIFYPASVSDAGLVGMGYGNVTSGGGGGAATWCVRPAVPVHNHNPSVNPAVGFVHAPSFPNRVGAVGGNAVDVSSSFAAATHGFPMNLGGNWVASGNGLDSINSSDVNNNNNNNNNNNSNNSAVPGNSRVISNYGDNVCNNGVGSISNTPSSQRTDQANEEGGDDSISGRKMKLMCSYGGKILPRPSDGMLRYVGGQTRIISVKRDVSFNDLVQKMVSTFGQHVVIKYQLPDEDLDALVSVSCPDDLENMMEEYERLIERSPDGSPKLRVFLLSSSELDPSGVAQFVNLHDGGLKYVEAVNGIADGIGGKLTRKASYTSAVSTQNSDFSGIDALDSLNAAQGDVSGVPVPMPSSLSPVGNVAASHDGSSNSVVPEPGTSYTEASAVPLGIHVSNSGPTHIPPLQNEVELEKSVPVTFSQTQFGLQQSGLEIPPSAPLQTSFDHRQEVMNHADYVQLPPHMGFLNPQFLGKPGSIYTQHQFHDHTSRFGSHQVIPAMQMAMTQPFSHAALRPSVIQPQPFMQPQQNLLDQYNDENASGLRIHQVPAEQSYKTFQVQVPFGGNYGWVQVPSAEHVIFSDAFVPQQPMMIPEKLQRVEDCYMCQKKLPHAHSDPVVQDQRNSCAGPISDSIPSFYSLPTEDNSRAQATNMILVSAPMKDDNVEQAVVTRPKVHSKLDTPAGAACTDTTGLSLELESETAFIQRLDRSDHPRNAVIPEAVVRTGEKPLPSDGLMGTAPHSYRDDITRQHMVPLQSRSKEDALVNKPVANDIPLVGGTSVENSDCVVQECPTEYTNELPSTTSKADAMENWIAQDLLKPIDGRIDNLKIGNPENFLNNDKFDYSTQHVAEKKGVPLDNKIGKSKLITDADQINMIDILPSSTVEISYGNNSRPVEYNEVIQTPVWGIPGSNPQPKSGNHHREDAVLSSVPPSARFGEVKDSSNSLFSNQDLWNIHSSYFPPPRPNKVALKKETYSNMDQLGENLGINGEQNLEAQLDNGLYQTLKQNLTLEEARSAAKVSSEDRQLQAVAEGLAASVLHSSTSSNLDLNAKDVPHHEDIGDGDVQNNLIDIQHKDKIQDLKSKLPEKLNFGFPASDVGALQIIKNCDLEELIELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKHSEQERLRADFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKNGRNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVNNTLRPPVPESCDPEWRLLMEMCWSSEPSERPSFTEIANGLRSMATKISPKGQNQQQQPASSLSQAQK 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1935g00021 1434 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1232 1423 - -
Vium1935g00021 1434 Pfam Protein tyrosine and serine/threonine kinase 1149 1405 IPR001245 GO:0004672|GO:0006468
Vium1935g00021 1434 ProSiteProfiles Protein kinase domain profile. 1144 1411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1935g00021 1434 SMART PB1_new 227 314 IPR000270 GO:0005515
Vium1935g00021 1434 SUPERFAMILY CAD & PB1 domains 228 319 - -
Vium1935g00021 1434 SUPERFAMILY Protein kinase-like (PK-like) 1139 1405 IPR011009 -
Vium1935g00021 1434 MobiDBLite consensus disorder prediction 396 420 - -
Vium1935g00021 1434 Gene3D - 233 316 - -
Vium1935g00021 1434 CDD STKc_MAP3K-like 1150 1405 - -
Vium1935g00021 1434 Gene3D Phosphorylase Kinase; domain 1 1138 1231 - -
Vium1935g00021 1434 SMART serkin_6 1144 1415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1935g00021 1434 MobiDBLite consensus disorder prediction 144 208 - -
Vium1935g00021 1434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1269 1281 IPR008271 GO:0004672|GO:0006468
Vium1935g00021 1434 Gene3D Transferase(Phosphotransferase) domain 1 1232 1434 - -
Vium1935g00021 1434 MobiDBLite consensus disorder prediction 144 198 - -
Vium1935g00021 1434 MobiDBLite consensus disorder prediction 1411 1434 - -
Vium1935g00021 1434 CDD PB1_UP2 216 313 - -
Vium1935g00021 1434 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1137 1231 - -
Vium1935g00021 1434 Pfam PB1 domain 232 312 IPR000270 GO:0005515
Vium1935g00021 1434 ProSitePatterns Protein kinases ATP-binding region signature. 1150 1181 IPR017441 GO:0005524
Vium1935g00021 1434 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 232 316 - -
Vium1935g00021 1434 PANTHER SERINE-THREONINE PROTEIN KINASE 279 1408 - -
Vium1935g00021 1434 MobiDBLite consensus disorder prediction 398 419 - -
Vium1935g00021 1434 PRINTS Tyrosine kinase catalytic domain signature 1226 1239 IPR001245 GO:0004672|GO:0006468
Vium1935g00021 1434 PRINTS Tyrosine kinase catalytic domain signature 1378 1400 IPR001245 GO:0004672|GO:0006468
Vium1935g00021 1434 PRINTS Tyrosine kinase catalytic domain signature 1263 1281 IPR001245 GO:0004672|GO:0006468
Vium1935g00021 1434 PRINTS Tyrosine kinase catalytic domain signature 1334 1356 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1935g00021 Vium-Chr1935 159232 166361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1935g00021 194 687 MAP Kinase Kinase Kinase AT3G46920 39.521 7.87e-85 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium1935g00021 PK_Tyr_Ser-Thr 2.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1935g00021 - - gmx:100776264 2264.96