Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1935g00016 ATGGCTTTTCACGACCATATGGCGCACGAAATCACGTTTCAGCCCTTCACCGAGGACCAGCAGATGGGTCAGGGCAGAGACATGCAGCGGCTGCTGCCGCTCTCCGCCGGAGCACCGACATGGCTCAACGGCAACAACGCGGCCACGCTTCGGCAGCAGAATTTCCTCCACCTGCAACCGGAGTCGGCAACGGCGCAGCCTAACGACGACGTTCGTGGGGGCATAGATCGGAACCGGACGGAGAGCAACTCGGAACCGGACGATTTGGCGGAATACAAAGCGGACATTCTGGGACACCCGCTTTACGATCAACTCCTATCGGCTCACGTCTCGTGTCTGAGGATCGCCACGCCCGTTGACCAGCTTCCACGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTTGACAAGTACTCTGGCCTTGGAAACGGCGTCGTCGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAACCTTGACTGGTGTATCTCCCGGAGAAGGAACGGGTGCAACGATGTCAGACGATGAAGAAGACCAGGCTGAGAGTAATGCCAACTTATACGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGACCTCTTGTTCCCACCGAAACTGAAAGATCTTTGATGGAACGTGTCAGGCAGGAGTTGAAGCATGAGCTGAAACAGGGTTACAAGGAGAAGATTGTCGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGTGACACCACTTCGCTTTTAAAAGCATGGTGGCAGTCACATTCGAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAACTAAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1092 0.5137 MAFHDHMAHEITFQPFTEDQQMGQGRDMQRLLPLSAGAPTWLNGNNAATLRQQNFLHLQPESATAQPNDDVRGGIDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1935g00016 363 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Vium1935g00016 363 SMART HOX_1 276 341 IPR001356 GO:0003677
Vium1935g00016 363 MobiDBLite consensus disorder prediction 198 217 - -
Vium1935g00016 363 FunFam homeobox protein knotted-1-like 3 isoform X1 275 336 - -
Vium1935g00016 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 348 - -
Vium1935g00016 363 Pfam KNOX2 domain 146 196 IPR005541 GO:0003677|GO:0005634
Vium1935g00016 363 MobiDBLite consensus disorder prediction 60 88 - -
Vium1935g00016 363 ProSiteProfiles ELK domain profile. 254 274 IPR005539 GO:0003677
Vium1935g00016 363 Gene3D - 280 357 - -
Vium1935g00016 363 Pfam ELK domain 254 275 IPR005539 GO:0003677
Vium1935g00016 363 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Vium1935g00016 363 MobiDBLite consensus disorder prediction 331 363 - -
Vium1935g00016 363 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677|GO:0006355
Vium1935g00016 363 SMART ELK_2 254 275 IPR005539 GO:0003677
Vium1935g00016 363 SMART KNOX2_2 142 197 IPR005541 GO:0003677|GO:0005634
Vium1935g00016 363 MobiDBLite consensus disorder prediction 72 88 - -
Vium1935g00016 363 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677
Vium1935g00016 363 CDD homeodomain 277 338 IPR001356 GO:0003677
Vium1935g00016 363 SUPERFAMILY Homeodomain-like 276 340 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1935g00016 Vium-Chr1935 141060 146293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1935g00016 90 358 Homeobox Transcription Factor Family AT5G11060 82.418 1.42e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium1935g00016 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1935g00016 - - gmx:100816347 686.411