Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1935g00015 ATGGCTTTTCACGACCATATGGCGCACGAAATCACGTTTCAGCCCTTCACCGAGGACCAGCAGATGGGTCAGGGCAGAGACATGCAGCGGCTGCTGCCGCTCTCCGCCGGAGCACCGACATGGCTCAACGGCAACAACGCGGCCACGCTTCGGCAGCAGAATTTCCTCCACCTGCAACCGGAGTCGGCAACGGCGCAGCCTAACGACGACGTTCGTGGGGGCATAGATCGGAACCGGACGGAGAGCAACTCGGAACCGGACGATTTGGCGGAATACAAAGCGGACATTCTGGGACACCCGCTTTACGATCAACTCCTATCGGCTCACGTCTCGTGTCTGAGGATCGCCACGCCCGTTGACCAGCTTCCACGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTTGACAAGTACTCTGGCCTTGGAAACGGCGTCGTCGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAACCTTGACTGGTGTATCTCCCGGAGAAGGAACGGGTGCAACGATGTCAGACGATGAAGAAGACCAGGCTGAGAGTAATGCCAACTTATACGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGACCTCTTGTTCCCACCGAAACTGAAAGATCTTTGATGGAACGTGTCAGGCAGGAGTTGAAGCATGAGCTGAAACAGGGTTACAAGGAGAAGATTGTCGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGTGACACCACTTCGCTTTTAAAAGCATGGTGGCAGTCACATTCGAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAACTAAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1089 0.5142 MAFHDHMAHEITFQPFTEDQQMGQGRDMQRLLPLSAGAPTWLNGNNAATLRQQNFLHLQPESATAQPNDDVRGGIDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSGAGETSNQSFM 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1935g00015 362 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677|GO:0006355
Vium1935g00015 362 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Vium1935g00015 362 SMART HOX_1 276 341 IPR001356 GO:0003677
Vium1935g00015 362 MobiDBLite consensus disorder prediction 198 217 - -
Vium1935g00015 362 FunFam homeobox protein knotted-1-like 3 isoform X1 275 336 - -
Vium1935g00015 362 SUPERFAMILY Homeodomain-like 276 340 IPR009057 -
Vium1935g00015 362 MobiDBLite consensus disorder prediction 331 362 - -
Vium1935g00015 362 Pfam KNOX2 domain 146 196 IPR005541 GO:0003677|GO:0005634
Vium1935g00015 362 MobiDBLite consensus disorder prediction 60 88 - -
Vium1935g00015 362 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Vium1935g00015 362 ProSiteProfiles ELK domain profile. 254 274 IPR005539 GO:0003677
Vium1935g00015 362 Pfam ELK domain 254 275 IPR005539 GO:0003677
Vium1935g00015 362 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 342 - -
Vium1935g00015 362 SMART ELK_2 254 275 IPR005539 GO:0003677
Vium1935g00015 362 SMART KNOX2_2 142 197 IPR005541 GO:0003677|GO:0005634
Vium1935g00015 362 MobiDBLite consensus disorder prediction 72 88 - -
Vium1935g00015 362 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677
Vium1935g00015 362 CDD homeodomain 277 338 IPR001356 GO:0003677
Vium1935g00015 362 Gene3D - 273 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1935g00015 Vium-Chr1935 141058 146293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1935g00015 90 357 Homeobox Transcription Factor Family AT5G11060 82.721 3.58e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium1935g00015 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1935g00015 - - gmx:100816347 684.485