Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1935g00004 ATGGAGATTTTCAAGTGCTTCTACATCAATCTTCTTGCTACCTTCATGATATCAACAGTTTTATCAATCGACCCTTACTCACAAGCACTTCTCAGCCTAAAAGATGAACTTGTAGATGATGATAACAGCTTGAGCAACTGGGTGGTACCCTCAGCAGGAAAATTAACTGGGAAATACTATGTGTGTTCTTGGTCAGGTGTCAAGTGTGACAATGACTCAACCACTGTAACTTCTATAGACCTTTCCATGAAGAAACTCGGAGGTGTTTTGTCAGGGAAGCCATTCAGCACCTTCACAAACCTCACTAATCTCAACCTGAGCTACAATTTCTTCTCAGGGCAGCTTCCAGCTGAGATTTTCAACCTCACCAGCCTCACAAGTTTGGACATCAGCAGAAACAATTTTTCTGGTTCCTTCCCTGGTGGAATTACTAGGCTCCAAAATTTGGTTGTACTTGATGCCTTTAGCAACAGTTTTTCAGGGTCATTGCCTGCTGAATTTTCACAGCTAGCAAACCTTAAAGTTCTCAATCTAGCTGGGAGCTACTTCAGAAATTCAATTCCATCTGAATACGGTTCTTTCAAAAGCCTTCGGTTTCTTCATCTTGCAGGAAATTCTCTTTCAGGAAGTATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCATATGGAGATTGGGTACAACCTATACCAGAGTTTTATTCCACCTGAACTAGGTAACATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTATCAGGCCACATACCAAAGCAACTCTCCAATCTCACCAGTTTGCAATCACTATTCCTTTTCAGAAACCAGCTCACAGGAACAGTGCCAAGTGAGCTCGGTAACATTGAATCCCTGGCAGATTTAGATCTCTCTGATAACTTCCTCTCAGGGTCCATTCCCGAAAGCTTCTCAATGCTAAAGAACCTAAGACTACTCAGTCTCATGTACAATGATATGAGTGGCATTGTTCCTGAAGGAATTGCTCAACTCCCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGGTCACTTCCTCGGAGCTTAGGGAGGAACTCCAAACTCAAGTGGGTGGATGCTTCCACAAACAATTTAGTGGGAAGCATACCACCTGATATCTGTGTGAGTGGAGTACTATTTAAGCTAATACTGTTTTCAAACAAATTCAAAGGTGATCTCTCATCAATCTCCAACTGTTCTTCACTCGTTCGCCTTCGCCTAGAAGATAATTCATTTTCAGGAGAAATCACTTTGAAATTCAGCCATCTTCCTGATATCTTATACGTCGATCTCTCCAGAAACAACTTTGTTGGTGGCATTCCCTCCGATATTTCTCAAGCCACTCAACTGGAGTATTTTAATGTCTCTTATAATCTGAAATTAGGAGGTACCATCCCTGCACAAACGTGGTCTTTGCCCCAACTTCAAAATTTTTCAGCATCTTCTTGTGGTATTTCTGGTGATCTTCCCCTATTTGAGTCCTGCAAATCAATTTCAGTTATTGATCTGGATAACAATAACTTATCTGGGATCATCCCAAACAGTGCTTCCAAATGTCGAGCTCTTGAGAAAATCAACCTATCCTACAATAGCTTAACAGGTCATATACCTGATGAGCTTGCAAATATTCCTGTTCTTGTTGTGGTGGACCTATCAAACAACAAGTTCAATGGCCTCATACCTGCTGAGTTTGGCAGTGCTTCAAGTTTACAACTTCTGAATGTGTCTTTTAACAATATCTCCGGTTCGATACCCACAGGAAAGACATTCAAATTGATGGGAAAAAGTGCATTTATCGGAAATTCAGAGCTATGTGGAGCACCCCTGAGATCATGCCCTCATTCAGTTGGAATATTGGGCAGAAAAGGCCCGTGGAAGATTACACATATTGTGTTACTCTCTGTAGGGTTGCTAATAGTTCTTCTGGGACTAACTTTTGGAATATTTTATTTGAGAAGGGGGATAAAAAGTCAATGGAAGATGGTATCATTCGTGGGTCTCCCTCAATTCACAGCAAATGATGTTTTGACGAGCCTCACTGCCACAAAACCAACAGAAGTTACATCACCATCACCAGCAGTTACAAAGGCTGTTCTGCCGACAGGAATAACAGTTTTGGTGAAGAAGATGGAGTGGGAAGCTAGGAGCATCAAGGTTGTGTCAGAATTCATAACGAGACTGGGAAATTCAAGGCACAAGAATTTAATCAGACTACTGGGGTTTTGCCACAACCAGCATTTAGTCTATCTTTTGTATGATTACTTGCCCAATGGGAATTTGGCTGAGAAAATGGAAATCAAATGGGATTGGGCAGCAAAATTCAGAACAGTTGTTGGAATTGCAAGGGGACTCTGCTTTCTTCACCATGAATGTTACCCAGCAATACCCCACGGAGACTTGAAGCCTACCAACGTTGTATTTGACGAAAACATGGAACCCCATTTGGCAGAATTTGGGTTCAAACAGGTTTCGAGGTTGAGCAAAGGCTCATCACCCACCATAACCAAGTGGGAAGCAGAATATGATGCTGCCACAAAAGAAGAACTGCGAATGGATATCTACAATTTTGGGGAGATGATTCTGGAAATTTTAAGTGGCGGAAGGTTGAGAAATGCAGGAGGCAGCATACACAGCAAACCATGGGAGGATCTCTTGAGAGAAATTTATAATGAGAATGAAGCAAACTCCGCAAGTTCATTGGAAGAGATTAAACTGGTTCTTGAGGTTGCTATGTTTTGCACCAGAAGCAGGTCGTCAGATCAGCCATCAATGGAAGATGTTCTGAAGCATCTGTCAGGCCTAAATCATATAGATGAAGGGCAATAA 2856 0.4195 MEIFKCFYINLLATFMISTVLSIDPYSQALLSLKDELVDDDNSLSNWVVPSAGKLTGKYYVCSWSGVKCDNDSTTVTSIDLSMKKLGGVLSGKPFSTFTNLTNLNLSYNFFSGQLPAEIFNLTSLTSLDISRNNFSGSFPGGITRLQNLVVLDAFSNSFSGSLPAEFSQLANLKVLNLAGSYFRNSIPSEYGSFKSLRFLHLAGNSLSGSIPPELGNLKTVTHMEIGYNLYQSFIPPELGNMSQLQYLDIAGANLSGHIPKQLSNLTSLQSLFLFRNQLTGTVPSELGNIESLADLDLSDNFLSGSIPESFSMLKNLRLLSLMYNDMSGIVPEGIAQLPSLETLLIWNNRFSGSLPRSLGRNSKLKWVDASTNNLVGSIPPDICVSGVLFKLILFSNKFKGDLSSISNCSSLVRLRLEDNSFSGEITLKFSHLPDILYVDLSRNNFVGGIPSDISQATQLEYFNVSYNLKLGGTIPAQTWSLPQLQNFSASSCGISGDLPLFESCKSISVIDLDNNNLSGIIPNSASKCRALEKINLSYNSLTGHIPDELANIPVLVVVDLSNNKFNGLIPAEFGSASSLQLLNVSFNNISGSIPTGKTFKLMGKSAFIGNSELCGAPLRSCPHSVGILGRKGPWKITHIVLLSVGLLIVLLGLTFGIFYLRRGIKSQWKMVSFVGLPQFTANDVLTSLTATKPTEVTSPSPAVTKAVLPTGITVLVKKMEWEARSIKVVSEFITRLGNSRHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMEIKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKPTNVVFDENMEPHLAEFGFKQVSRLSKGSSPTITKWEAEYDAATKEELRMDIYNFGEMILEILSGGRLRNAGGSIHSKPWEDLLREIYNENEANSASSLEEIKLVLEVAMFCTRSRSSDQPSMEDVLKHLSGLNHIDEGQ 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1935g00004 951 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Vium1935g00004 951 SMART serkin_6 704 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1935g00004 951 Gene3D Ribonuclease Inhibitor 504 622 IPR032675 -
Vium1935g00004 951 ProSiteProfiles Protein kinase domain profile. 669 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1935g00004 951 FunFam Leucine-rich repeat receptor-like protein kinase 23 188 - -
Vium1935g00004 951 Pfam Leucine rich repeat N-terminal domain 28 70 IPR013210 -
Vium1935g00004 951 Gene3D Ribonuclease Inhibitor 284 385 IPR032675 -
Vium1935g00004 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 624 - -
Vium1935g00004 951 Gene3D Ribonuclease Inhibitor 386 502 IPR032675 -
Vium1935g00004 951 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Vium1935g00004 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Vium1935g00004 951 SMART LRR_typ_2 194 218 IPR003591 -
Vium1935g00004 951 SMART LRR_typ_2 338 362 IPR003591 -
Vium1935g00004 951 SMART LRR_typ_2 266 290 IPR003591 -
Vium1935g00004 951 SMART LRR_typ_2 553 576 IPR003591 -
Vium1935g00004 951 SMART LRR_typ_2 98 122 IPR003591 -
Vium1935g00004 951 SMART LRR_typ_2 314 337 IPR003591 -
Vium1935g00004 951 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 98 192 - -
Vium1935g00004 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 765 949 - -
Vium1935g00004 951 SUPERFAMILY Protein kinase-like (PK-like) 704 945 IPR011009 -
Vium1935g00004 951 Gene3D Phosphorylase Kinase; domain 1 700 762 - -
Vium1935g00004 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 680 764 - -
Vium1935g00004 951 Gene3D Transferase(Phosphotransferase) domain 1 763 950 - -
Vium1935g00004 951 SUPERFAMILY L domain-like 59 380 - -
Vium1935g00004 951 SUPERFAMILY RNI-like 283 596 - -
Vium1935g00004 951 Gene3D Ribonuclease Inhibitor 186 283 IPR032675 -
Vium1935g00004 951 Pfam Protein tyrosine and serine/threonine kinase 711 941 IPR001245 GO:0004672|GO:0006468
Vium1935g00004 951 FunFam Leucine-rich repeat receptor-like protein kinase TDR 189 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1935g00004 Vium-Chr1935 54651 58159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1935g00004 7 942 Receptor kinase-like Gene Family AT5G51350 54.065 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium1935g00004 PK_Tyr_Ser-Thr 1.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1935g00004 - - gmx:100782323 1587.01