Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1934g00002 ATGTTGGTAGTTAATATAAATAGGGGCACCCTTGGTTCTCTTCTCCATCGAAACAAGAGTTGGGAGGAGACTTTCTTTTTGGTGTTTGTTAGGTTCAAAATGTCTTCACCTTGTGATTCAGTGAGTATGATCTCAAAATGCAAAGTCGTTCCTCAGAAGAACTCTACTATGGGAGATCTGAAACTCTCAATCTCAGACCTTAACATGCTCTTATGTCACTACATCCAAAAGGGCTGTCTCTTCACGACCCCATCTCTACCGTCACAAGCTCTCATCCCTCATCTCACCAAAGCACTGTCTCATACCCTCTCGCTTTTTCCTCCCTTTGCAGGTCGCCTCAAAACCGATGTTGACGGCTATGTCTACATCACATGCAACGACGCTGGCGTCGATTTCATCCACGCTACCGCCACTCATATCTCCCTCGCCGACCTCCTCTCACCCTCCGATGTTCATCCAACTACTAAGCACCTCTTTCCTTTCCACCACAAAATTAGTTACACCGCTCATTCCTCCCCTATCATGGCCTTTCAGGTCACCGAGCTTGCCGACGGTGTTTTCATAGGTTGTGCTGTCTGTCACGCCGTCACCGACGGTGCCTCCTTCTGGAACTTCTTTAACACTTTCGCAGCAATTTCTCGAGGAGAAACCGCTTGTCTCTCCAGCCTCCCGGATTTTCGTCGGGATTCCATCCTCACCTCCAAGGTCGTGCTTCAACTTCCGAAAGTAGAAATAAAGGCCACCTTCAACGTTGAGGCACCATTTCGCGAGAGAATCTTCAGTTTCAGCCGTGAATCAATTCAGAAGCTGAAAGCCTTAGTGAACAAACGTCCGATCATGTTCACGCCAGAGAACATTGATGTCGCGGATGAGACGATGGCGAAGCTGAGCACTGACACACAACTGAAAACAGCTACAGAAGGCGTAAGGGGTGAAACAACAGAGATTTCTTCATTCCAATCGTTGTGCGCACTGATGTGGAAGTGCGTGACTAGGGCGAGGAATATGGAGAAGACTAAAGTGACGTCGTTTCGAACTGCCGCTAATATTCGGCAACGCATGAAGCCCAAATTGGGGGATTGTTACTTCGGGAATGCGCTTCAGAGCATTACCACGTGTGCAACAGTGGGTGATGTGGTGTTCAAGGACCTTCAATGGTGCGCAGAGCAACTGAATCGGAGCGTGAAGGCGTTTGATAGCGCCACGGTGCAGCGTAATGTGGAGAACTGGGAGCGTGAGCCAAAGTGCTACGAGTTAGGCAACCATGACGGCGCCACTGTGCAGATGGGAAGCTCGCCAAGATTTCCGATGTATGACAACGATTTTGGATGGGGGAGGCCCATAACGGTTCGGAGCGGCGGAGCAAACAAGTTTGACGGTAAAATGTCGGCTTTTCCTGGAAGAATTGGCGATGGCAGCGTCGATGTGGAGGTGGTTTTGGCGCCTGAAACAATGGCGCAACTCGAGTCCGATCCCGAATTCATGCTTTACGTGTCTGCCCAATGCGTAGAGACACGTGTTTGA 1524 0.4974 MLVVNINRGTLGSLLHRNKSWEETFFLVFVRFKMSSPCDSVSMISKCKVVPQKNSTMGDLKLSISDLNMLLCHYIQKGCLFTTPSLPSQALIPHLTKALSHTLSLFPPFAGRLKTDVDGYVYITCNDAGVDFIHATATHISLADLLSPSDVHPTTKHLFPFHHKISYTAHSSPIMAFQVTELADGVFIGCAVCHAVTDGASFWNFFNTFAAISRGETACLSSLPDFRRDSILTSKVVLQLPKVEIKATFNVEAPFRERIFSFSRESIQKLKALVNKRPIMFTPENIDVADETMAKLSTDTQLKTATEGVRGETTEISSFQSLCALMWKCVTRARNMEKTKVTSFRTAANIRQRMKPKLGDCYFGNALQSITTCATVGDVVFKDLQWCAEQLNRSVKAFDSATVQRNVENWEREPKCYELGNHDGATVQMGSSPRFPMYDNDFGWGRPITVRSGGANKFDGKMSAFPGRIGDGSVDVEVVLAPETMAQLESDPEFMLYVSAQCVETRV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1934g00002 507 Gene3D - 41 244 IPR023213 -
Vium1934g00002 507 Pfam Transferase family 40 495 - -
Vium1934g00002 507 Gene3D - 245 490 IPR023213 -
Vium1934g00002 507 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 43 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1934g00002 Vium-Chr1934 18632 20461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1934g00002 65 489 Monolignol Biosynthesis Gene Families AT5G48930 28.767 1.38e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1934g00002 - - vum:124828482 1027.31