Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1934g00001 ATGTTATCTACAACAATGCCTTCTTCTTCTTCTTCTTTCTCTTCCGATGATGCAATCACTGTCCTCTCAAAATGCACTGTTCTGCCTCACCAAAATTCCACTCTAGGTGATCTCAAGCTCTCTATATCTGACCTTAACATGCTTCTCTCTCACTACATTCAAAAGGGCTGTCTCTTCACCACCCCATCTCTCCCCTCTCACACTCTCATCCCTCACCTCATCAACGCGCTTTCTCACACACTCTCCCTTTTCCCTCCCTTCGCTGGCCGCCTCAAAACTGACCATCACGGCTACGTCTACATCGCATGCAACGATGCTGGCGTCGACTTCATCCACGCCACCGCCGATCATATCTCCGTTACCGACCTCCTGCTTCCTTCCCATCTTCATCCAACCCTCAACCACCTCTTTCCTTTCCACCACAAAATTAGTTACACCGCTCATTCCTCCCCTATCATGGCCTTTCAGGTCACCGAGCTCGTTGACGGCCTTTTCATCGGTTGTTCTGTCTGCCACGCTGTCACCGACGGAGCCTCCTTCTGGAACTTCTTTAACACCTTCGCTGCACTTTCTAAAGGAGTAACCATATGCCCCTCCAGGCTTCCGGATTTTCGTCGGGATTCCATCCTCACCTCCAAAATTCTGCTTCGGCTGCCAAAAGAAATCAAGGTGACCTTCAACGTTGACGCACCCTTTCGCGAGAGAATCTTCAGCTTCAGCCGTGAGTCAATTCAGAAGCTGAAAGCCGTAGTGAATAATGGTGGGAAAATTTATTGGTTGGAGAATGTTGAGTTGATGGGAAAGCTGAGCCACGATACACAAGCGAAAACGACGGAGATTTCATCGTTTCAATCGTTGTGCGCGCTGATGTGGCGGTCCGTTACAAAGGCGAGGAATCTGGAAGGGAGTAAAGTGACGACGTTTCGAATGGCAGTCAATGTTCGACATCGCATGGAGCCCAAGTTGGGAGACCATTACTTTGGAAACGCGATTCAGAGCATTGCCACGTGTGCAGAAGCGGGTGACGTGGTGTCTAGCGAGCTTGGATGGTGCGCGGAGCAACTGAACAAAAGCGTAAAGGCTTTCGACAGTGCCACAGTGTGCCGCAACGTGGAGAATTGGGAGCGTGAGCCAAAGTGCTTCGAGTTGGGGAACCACGATGGCGCCACTTTGCAGATGGGAAGCTCGCCCAGATTTCCGATGTACGACAATGATTTTGGATGGGGGCGGCCCCTCGCTGTGCGGAGCGGTGGAGCCAACAAGTTTGATGGCAAAATGTCGGCGTTTCCAGGTAGGAATGGCGGTGGTAGCGTTGACTTGGAGGTGGTTTTGGCGCCTCACACCATGGACAAACTTCTCTCTGATCCCGAGTTCATGTCTTATGTCTCCGGTTAG 1395 0.5125 MLSTTMPSSSSSFSSDDAITVLSKCTVLPHQNSTLGDLKLSISDLNMLLSHYIQKGCLFTTPSLPSHTLIPHLINALSHTLSLFPPFAGRLKTDHHGYVYIACNDAGVDFIHATADHISVTDLLLPSHLHPTLNHLFPFHHKISYTAHSSPIMAFQVTELVDGLFIGCSVCHAVTDGASFWNFFNTFAALSKGVTICPSRLPDFRRDSILTSKILLRLPKEIKVTFNVDAPFRERIFSFSRESIQKLKAVVNNGGKIYWLENVELMGKLSHDTQAKTTEISSFQSLCALMWRSVTKARNLEGSKVTTFRMAVNVRHRMEPKLGDHYFGNAIQSIATCAEAGDVVSSELGWCAEQLNKSVKAFDSATVCRNVENWEREPKCFELGNHDGATLQMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKMSAFPGRNGGGSVDLEVVLAPHTMDKLLSDPEFMSYVSG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1934g00001 464 Gene3D - 221 454 IPR023213 -
Vium1934g00001 464 Pfam Transferase family 19 459 - -
Vium1934g00001 464 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 21 460 - -
Vium1934g00001 464 Gene3D - 17 215 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1934g00001 Vium-Chr1934 1770 3755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1934g00001 43 449 Monolignol Biosynthesis Gene Families AT5G48930 28.372 1.23e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1934g00001 - - gmx:100792476 728.783