Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1933g00012 ATGCACGTGAAAATGTATGTAGGACAAGCATTGATGAAGATTAAGGCTTCATTCAGCAATGTAGCAGATGTTCTGCATGATTGGGATGATTTGCATAGTGACGACTTCTGCTCCTGGAGTGGAGTCTTGTGTGACAATGTCAGCCTTACTGTTCTCTCTCTAAACTTGTCAAGCTTGAACCTTGGTGGGGAGATATCACCGGCCATTGGTGACTTAGGAAACTTGCAATCCATAGACCTGCAGGGGAATAAACTCACTGGTCAAATTCCGGATGAAATTGGGAACTGTGCTGCACTTATTCATCTGGATTTGTCTGATAATCTGCTATATGGTGATATACCTTTCTCCATATCAAAACTGAAGCAGCTTGTGTTTCTGAATTTAAAGAGTAATCAGTTGACTGGTCCTATCCCTTCAACTTTAACCCAAATTCCTAACTTGAAGACTCTCGATCTTGCACGAAATAGACTCACTGGTGAGATTCCAAGGCTACTCTACTGGAATGAAGTCCTGCAGTACCTTGGGTTGCGAGGGAACATGTTGAGTGGAACTCTGTCGCCTGATATCTGTCAATTAACTGGTTTGTGGTATTTTGATGTGAGAGGCAATAATTTGACTGGCACGATACCTGACAGCATTGGAAACTGCACAAATTTTGAAATCCTGGATCTGTCATATAACCAGATTTCTGGGGAGATTCCCTATAATATCGGATTTCTTCAAGTAGCTACTTTGTCACTTCAAGGAAATAGACTAACTGGTAAGATTCCGGAAGTCATTGGTTTAATGCAAGCCCTTGCTATTTTGGATTTGAGTGAGAATGAGCTGATAGGACCTATCCCTCCCATACTAGGCAATCTGTCTTTTACTGGCAAGCTGTACCTTCATGGAAACATGATCACTGGATCAATACCTCCAGAACTTGGCAATATGTCAAGACTAAGCTACCTGCAATTGAATGACAATAAACTAGTTGGCCAAATTCCGGATGAACTTGGGAAGCTCGAACACTTGTTTGAATTGAATCTTGCCAATAATCATCTTGAAGGATCTATTCCACTTAACATTAGCTCCTGTACGGCCTTGAATAAGTTTAATGTGCATGGAAATCATTTAAGTGGTTCAATTCCTTTGAGCTTTAGCAGCCTGCAGAGCTTGACTTACTTAAACCTTTCTGCAAACAATTTCAAAGGGAGTATACCTGTTGAATTAGGCCACATAATAAATCTCGATACGTTAGATCTATCTAGCAATAATTTTTCAGGGCATGTTCCAGGGTCTGTTGGTTATCTTGAGCATCTTCTAACTTTGAACTTAAGCCATAATAGTCTTCAGGGTCCCTTGCCTGCTGAATTTGGTAATCTTAGAAGCATACAAATTATTGATATCTCATTCAACCATCTGTTGGGTAGTATGCCTCCAGAAATTGGTCAGCTGCAGAATCTTGTGTCTCTGATTTTAAACAACAATGACTTGCGTGGGAAGATTCCAGACCAGATTACAAATTGCTTAAGTCTTAACTTCCTGAATGTCTCATATAATAACTTATCCGGGGTCATTCCTCTAATGAAGAACTTCTCCCGGTTTTCAGCTGACAGCTTCATTGGAAATCCATTTTTATGCGGAAATTGGTTAGGATCCATATGTGATCCTTACATACCAAAATCCAGAGTGGTTTTCTCCAGGGCTGCAGTTGTTTGTCTCATAGTTGGTACCATCATATTATTGGCGATGGTAACTGTTGCTCTCTACAGATCAAGCCAATCCATGGAATTGATTAAAGGATCCAGGAGAACTGAACAAGGGCCACCCAAACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTTACTGAGAATCTCAGTGAGAAGTATATTGTAGGATATGGTGCCTCAGGTACCGTCTACAAGTGTGTTTTGAAGAATTCCCGACCAATTGCAATTAAACGACTATACAACCAGCATCAACACAACTCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAGCATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTACATGGTCCCTTGAAAAAGGTAAAACTTGATTGGGAAGCACGCTTGAGGATTGCTGTGGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGACATTAAGTCCTCAAATATCCTGATAGATGAGAACTTTGAAGCTCGTCTCTCTGATTTTGGCATTGCCAAATGTTTGTCAACTACAAGAACACATGCATCAACATCTGTGGTTGGGACAATAGGCTATATTGACCCTGAGTATGCCAGGAGTTCTAGGTTGAATGAAAAATCTGACGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTCACAGGGAAGAAAGCAGTGGACAATGATTCCAACTTGCATCACTTGATATTATCTAAGGCAGATAACAACATTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAATGA 2637 0.4077 MHVKMYVGQALMKIKASFSNVADVLHDWDDLHSDDFCSWSGVLCDNVSLTVLSLNLSSLNLGGEISPAIGDLGNLQSIDLQGNKLTGQIPDEIGNCAALIHLDLSDNLLYGDIPFSISKLKQLVFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTNFEILDLSYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELIGPIPPILGNLSFTGKLYLHGNMITGSIPPELGNMSRLSYLQLNDNKLVGQIPDELGKLEHLFELNLANNHLEGSIPLNISSCTALNKFNVHGNHLSGSIPLSFSSLQSLTYLNLSANNFKGSIPVELGHIINLDTLDLSSNNFSGHVPGSVGYLEHLLTLNLSHNSLQGPLPAEFGNLRSIQIIDISFNHLLGSMPPEIGQLQNLVSLILNNNDLRGKIPDQITNCLSLNFLNVSYNNLSGVIPLMKNFSRFSADSFIGNPFLCGNWLGSICDPYIPKSRVVFSRAAVVCLIVGTIILLAMVTVALYRSSQSMELIKGSRRTEQGPPKLVILHMGLAIHTFDDIMRVTENLSEKYIVGYGASGTVYKCVLKNSRPIAIKRLYNQHQHNSREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWEARLRIAVGASEGLAYLHHDCNPRIIHRDIKSSNILIDENFEARLSDFGIAKCLSTTRTHASTSVVGTIGYIDPEYARSSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNIIMETVDPEVSITCMDLTHVKKTFQLALLCTK 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1933g00012 878 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 169 278 - -
Vium1933g00012 878 SUPERFAMILY L domain-like 288 542 - -
Vium1933g00012 878 Gene3D Phosphorylase Kinase; domain 1 592 703 - -
Vium1933g00012 878 Pfam Leucine rich repeat N-terminal domain 8 45 IPR013210 -
Vium1933g00012 878 ProSiteProfiles Protein kinase domain profile. 628 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1933g00012 878 Gene3D Ribonuclease Inhibitor 169 242 IPR032675 -
Vium1933g00012 878 PANTHER LEUCINE RICH REPEAT KINASE 2 213 877 - -
Vium1933g00012 878 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 599 703 - -
Vium1933g00012 878 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 6 168 - -
Vium1933g00012 878 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 704 878 - -
Vium1933g00012 878 SUPERFAMILY Protein kinase-like (PK-like) 605 850 IPR011009 -
Vium1933g00012 878 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524
Vium1933g00012 878 Pfam Leucine rich repeat 74 133 IPR001611 GO:0005515
Vium1933g00012 878 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Vium1933g00012 878 SMART serkin_6 628 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1933g00012 878 Gene3D Ribonuclease Inhibitor 243 552 IPR032675 -
Vium1933g00012 878 Gene3D Transferase(Phosphotransferase) domain 1 704 878 - -
Vium1933g00012 878 Pfam Leucine Rich repeat 215 232 IPR001611 GO:0005515
Vium1933g00012 878 Pfam Leucine Rich repeat 145 160 IPR001611 GO:0005515
Vium1933g00012 878 ProSiteProfiles Leucine-rich repeat profile. 146 168 IPR001611 GO:0005515
Vium1933g00012 878 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 279 552 - -
Vium1933g00012 878 Gene3D Ribonuclease Inhibitor 7 168 IPR032675 -
Vium1933g00012 878 SUPERFAMILY L domain-like 9 287 - -
Vium1933g00012 878 SMART LRR_typ_2 335 359 IPR003591 -
Vium1933g00012 878 SMART LRR_typ_2 431 454 IPR003591 -
Vium1933g00012 878 SMART LRR_typ_2 383 407 IPR003591 -
Vium1933g00012 878 SMART LRR_typ_2 144 168 IPR003591 -
Vium1933g00012 878 SMART LRR_typ_2 192 216 IPR003591 -
Vium1933g00012 878 SMART LRR_typ_2 72 96 IPR003591 -
Vium1933g00012 878 SMART LRR_typ_2 479 503 IPR003591 -
Vium1933g00012 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Vium1933g00012 878 Pfam Protein kinase domain 631 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1933g00012 Vium-Chr1933 76640 82733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1933g00012 74 878 Receptor kinase-like Gene Family AT5G07180 79.255 0.0 1306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vium1933g00012 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1933g00012 K20718 - gmx:100800185 1612.05