LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1929g00020	ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGACAATGATGATTTTCCATCAGTTCCGCCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGATCAGTTGTTCCGCCTCAACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGAAACTGCAAAGGTTCCTAGATCCCTTCGAAGAAGACCGTGGATTAATTATGGACAGTATGAGAACCATTCAGAAGAAGACTCTGACTGTGAGCGGCTTGATCAAACTTTGTCCTCTAGGGCTTGTCTTCCTCGAGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCTGAAGATGCTCGTAGGCCAAATATTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCATATGGAATTTGCCGCATTGTTCCACCTTCTTCTTGGAAACCCCCCTGTCCTCTCAAGGAAAAAAGTAAATGGGAGGGTTCTAAGTTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAAATGTCAAGGGTTCAAAGTAACATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAAGAGGACCCAATACAGCATTTTGTGAAGTGGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAGCATTTCAGAGATATGCAGAAGATTTTCAGCTCCAATACTTCAGAAAAAATGAGAACGTATCTCATTTGGGTGGTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGAATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAGCTAGGTTCTGCTTCACATGAAAAATACATAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAGAGCAGTGATATATCTGGTGTTTTAGTGCCGTGGTTATACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTTGAAGACCACCATTTATATTCATTGAACTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGAGTCCCTGGAAGAGATGCCTGCAAATTAGAAGAGGCTATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAACTTTCTCCTTCTATCCTCAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTGCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCAGGGTTCAATTGCGGTTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGTTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTTCGAGCTCAATGGGAGCTTAATTTGCTAAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCTTTTTGGCCAAAGCACTTAAGATGCGTGTTGAGATGGAACGAGCAAGAAGAGAATTTCTCTGCAGTTCTCTACAGGCATTAAAAATGGAGAGTACCTTTGATGCTACGGATGAAAGGGAATGTAACATATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGCTTTGTTCATGCTCTTGGGATTCCAGATTTTTTCTCTTTCGGTATGATGTTGCTGAACTAAATATTCTGGTGGAGGCATTGGAAGGAAAATTAAGTGCAATCTACAGATGGGCAAAATCAGATCTTGGGCTGGCACTATCATCTGATGTTTCATCAGGCAAGGAAACAATACTTAAAGAATTGAAATCACATTCATCTAGTTTGTTTCATTCTTCCAGGGCCACTTTGAATAAAGAGACGGCTTTGCATCCACCAAATAAATATATTGATGATTCTCAATTGATTGACGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCTGAAGCTATTTCATTTTTGAGTTCAACTAAGGACTTGCTAACATTTAACAGCTCAAAACCTACATCTGATATTCCTAATCATAAGATCTGTGTTAGTAAGGAAGAATCTGTCATTTGCAGCTCAAAGAGGAAAACACCTGGTTGTCAATTGTCTCAGGAGGATACATCGTATGCTTTATCTACTCTAGCTCAACAAGGAGGTGATAAAAGTTCACTTTACAGGCATAACAACGTTATACTTCTTAGTGACGATGAAGAAGACGAAAAGATGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTATGCTTGTAGGTCCTGGAGATAAGTCAAGCCCATTTAACAATATAGAAAGTACAAACTTGACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAGGGATGCTATGACATTACCCCATGAAAATATGAGTTCTGATTCAATTCCGTCTTTGCGTGTGAAACAAGAATGTCATGAATACACAGGAACAGTTCTAGCCTCTACCCCACTAGATCTTTCTTGTCATATTGGTCTTACAAGTGCACAATGTACTAAAAATATTTCAGCTCCTTCAAAAGTAGAAGCAAGTGATCATTGTTTGGAAAGTTTGGTGATGTCTCCTCTGAACCTACAACTTTCTGGCACTAAGGTTAAGACTGAAGATAATCACGAAAAATTTGGAGGATGTTCCACTTCTAATGTAGCAGACAATGCGAGAGCTGTTAATGGGAACTTTTCTTCTGGTCCAAACAATTTCCGACAGAAAGGTCCTCGGATAGCGAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGGGTTGTGCTTTCTGGAAAGTCTTGGTGTAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGAGTTAGATACATAAATGTCTCAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTACTTTCACCTCTTTTTCAATTGCTAGCTTTTGTCATGCAATTTGGGCATATACATATATACATACATATATACATATATACATACATA	3354	0.4058	MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMISCSASTSASESPSTQVENDVQVRETAKVPRSLRRRPWINYGQYENHSEEDSDCERLDQTLSSRACLPRGVIRGCPDCSNCQKVVARWRPEDARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSKWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNTAFCEVERFGFEPGPEFTLEAFQRYAEDFQLQYFRKNENVSHLGGNTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQLGSASHEKYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGRDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGFLAKALKMRVEMERARREFLCSSLQALKMESTFDATDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQLCSCSWDSRFFLFRYDVAELNILVEALEGKLSAIYRWAKSDLGLALSSDVSSGKETILKELKSHSSSLFHSSRATLNKETALHPPNKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEAISFLSSTKDLLTFNSSKPTSDIPNHKICVSKEESVICSSKRKTPGCQLSQEDTSYALSTLAQQGGDKSSLYRHNNVILLSDDEEDEKMSDSNRRKELSSMLVGPGDKSSPFNNIESTNLTISVTDTAVMGERDAMTLPHENMSSDSIPSLRVKQECHEYTGTVLASTPLDLSCHIGLTSAQCTKNISAPSKVEASDHCLESLVMSPLNLQLSGTKVKTEDNHEKFGGCSTSNVADNARAVNGNFSSGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVSDPSSMCYYISEILDAGRGWPLFMVLSPLFQLLAFVMQFGHIHIYIHIYIYTYI	1118

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1929g00020	1118	SMART	JmjN_1	147	188	IPR003349	-
	Vium1929g00020	1118	MobiDBLite	consensus disorder prediction	843	875	-	-
	Vium1929g00020	1118	ProSiteProfiles	JmjC domain profile.	360	523	IPR003347	-
	Vium1929g00020	1118	Pfam	F/Y-rich N-terminus	1035	1077	IPR003888	GO:0005634
	Vium1929g00020	1118	SMART	cupin_9	360	523	IPR003347	-
	Vium1929g00020	1118	SMART	fyrn_3	1036	1080	IPR003888	GO:0005634
	Vium1929g00020	1118	MobiDBLite	consensus disorder prediction	37	75	-	-
	Vium1929g00020	1118	ProSiteProfiles	JmjN domain profile.	148	189	IPR003349	-
	Vium1929g00020	1118	Gene3D	Cupin	133	507	-	-
	Vium1929g00020	1118	Pfam	jmjN domain	149	182	IPR003349	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1929g00020	Vium-Chr1929	136912	145276	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1929g00020	2	1089	JUMONJI Transcription Factor Family	AT1G08620	55.655	0.0	1087

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Vium1929g00020		JmjC	6e-46	CL0029

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1929g00020	K11446		-	gmx:100800271	1952.56

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