Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1929g00020 ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGACAATGATGATTTTCCATCAGTTCCGCCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGATCAGTTGTTCCGCCTCAACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGAAACTGCAAAGGTTCCTAGATCCCTTCGAAGAAGACCGTGGATTAATTATGGACAGTATGAGAACCATTCAGAAGAAGACTCTGACTGTGAGCGGCTTGATCAAACTTTGTCCTCTAGGGCTTGTCTTCCTCGAGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCTGAAGATGCTCGTAGGCCAAATATTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCATATGGAATTTGCCGCATTGTTCCACCTTCTTCTTGGAAACCCCCCTGTCCTCTCAAGGAAAAAAGTAAATGGGAGGGTTCTAAGTTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAAATGTCAAGGGTTCAAAGTAACATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAAGAGGACCCAATACAGCATTTTGTGAAGTGGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAGCATTTCAGAGATATGCAGAAGATTTTCAGCTCCAATACTTCAGAAAAAATGAGAACGTATCTCATTTGGGTGGTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGAATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAGCTAGGTTCTGCTTCACATGAAAAATACATAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAGAGCAGTGATATATCTGGTGTTTTAGTGCCGTGGTTATACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTTGAAGACCACCATTTATATTCATTGAACTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGAGTCCCTGGAAGAGATGCCTGCAAATTAGAAGAGGCTATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAACTTTCTCCTTCTATCCTCAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTGCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCAGGGTTCAATTGCGGTTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGTTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTTCGAGCTCAATGGGAGCTTAATTTGCTAAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCTTTTTGGCCAAAGCACTTAAGATGCGTGTTGAGATGGAACGAGCAAGAAGAGAATTTCTCTGCAGTTCTCTACAGGCATTAAAAATGGAGAGTACCTTTGATGCTACGGATGAAAGGGAATGTAACATATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGCTTTGTTCATGCTCTTGGGATTCCAGATTTTTTCTCTTTCGGTATGATGTTGCTGAACTAAATATTCTGGTGGAGGCATTGGAAGGAAAATTAAGTGCAATCTACAGATGGGCAAAATCAGATCTTGGGCTGGCACTATCATCTGATGTTTCATCAGGCAAGGAAACAATACTTAAAGAATTGAAATCACATTCATCTAGTTTGTTTCATTCTTCCAGGGCCACTTTGAATAAAGAGACGGCTTTGCATCCACCAAATAAATATATTGATGATTCTCAATTGATTGACGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCTGAAGCTATTTCATTTTTGAGTTCAACTAAGGACTTGCTAACATTTAACAGCTCAAAACCTACATCTGATATTCCTAATCATAAGATCTGTGTTAGTAAGGAAGAATCTGTCATTTGCAGCTCAAAGAGGAAAACACCTGGTTGTCAATTGTCTCAGGAGGATACATCGTATGCTTTATCTACTCTAGCTCAACAAGGAGGTGATAAAAGTTCACTTTACAGGCATAACAACGTTATACTTCTTAGTGACGATGAAGAAGACGAAAAGATGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTATGCTTGTAGGTCCTGGAGATAAGTCAAGCCCATTTAACAATATAGAAAGTACAAACTTGACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAGGGATGCTATGACATTACCCCATGAAAATATGAGTTCTGATTCAATTCCGTCTTTGCGTGTGAAACAAGAATGTCATGAATACACAGGAACAGTTCTAGCCTCTACCCCACTAGATCTTTCTTGTCATATTGGTCTTACAAGTGCACAATGTACTAAAAATATTTCAGCTCCTTCAAAAGTAGAAGCAAGTGATCATTGTTTGGAAAGTTTGGTGATGTCTCCTCTGAACCTACAACTTTCTGGCACTAAGGTTAAGACTGAAGATAATCACGAAAAATTTGGAGGATGTTCCACTTCTAATGTAGCAGACAATGCGAGAGCTGTTAATGGGAACTTTTCTTCTGGTCCAAACAATTTCCGACAGAAAGGTCCTCGGATAGCGAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGGGTTGTGCTTTCTGGAAAGTCTTGGTGTAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGAGTTAGATACATAAATGTCTCAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTACTTTCACCTCTTTTTCAATTGCTAGCTTTTGTCATGCAATTTGGGCATATACATATATACATACATATATACATATATACATACATA 3354 0.4058 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMISCSASTSASESPSTQVENDVQVRETAKVPRSLRRRPWINYGQYENHSEEDSDCERLDQTLSSRACLPRGVIRGCPDCSNCQKVVARWRPEDARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSKWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNTAFCEVERFGFEPGPEFTLEAFQRYAEDFQLQYFRKNENVSHLGGNTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQLGSASHEKYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGRDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGFLAKALKMRVEMERARREFLCSSLQALKMESTFDATDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQLCSCSWDSRFFLFRYDVAELNILVEALEGKLSAIYRWAKSDLGLALSSDVSSGKETILKELKSHSSSLFHSSRATLNKETALHPPNKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEAISFLSSTKDLLTFNSSKPTSDIPNHKICVSKEESVICSSKRKTPGCQLSQEDTSYALSTLAQQGGDKSSLYRHNNVILLSDDEEDEKMSDSNRRKELSSMLVGPGDKSSPFNNIESTNLTISVTDTAVMGERDAMTLPHENMSSDSIPSLRVKQECHEYTGTVLASTPLDLSCHIGLTSAQCTKNISAPSKVEASDHCLESLVMSPLNLQLSGTKVKTEDNHEKFGGCSTSNVADNARAVNGNFSSGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVSDPSSMCYYISEILDAGRGWPLFMVLSPLFQLLAFVMQFGHIHIYIHIYIYTYI 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1929g00020 1118 SMART JmjN_1 147 188 IPR003349 -
Vium1929g00020 1118 MobiDBLite consensus disorder prediction 843 875 - -
Vium1929g00020 1118 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Vium1929g00020 1118 Pfam F/Y-rich N-terminus 1035 1077 IPR003888 GO:0005634
Vium1929g00020 1118 SMART cupin_9 360 523 IPR003347 -
Vium1929g00020 1118 SMART fyrn_3 1036 1080 IPR003888 GO:0005634
Vium1929g00020 1118 MobiDBLite consensus disorder prediction 37 75 - -
Vium1929g00020 1118 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Vium1929g00020 1118 Gene3D Cupin 133 507 - -
Vium1929g00020 1118 Pfam jmjN domain 149 182 IPR003349 -
Vium1929g00020 1118 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Vium1929g00020 1118 Gene3D - 1029 1094 - -
Vium1929g00020 1118 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Vium1929g00020 1118 SUPERFAMILY Clavaminate synthase-like 357 550 - -
Vium1929g00020 1118 MobiDBLite consensus disorder prediction 45 69 - -
Vium1929g00020 1118 ProSiteProfiles FYR domain FYRN motif profile. 1022 1080 IPR003888 GO:0005634
Vium1929g00020 1118 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1929g00020 Vium-Chr1929 136912 145276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1929g00020 2 1089 JUMONJI Transcription Factor Family AT1G08620 55.655 0.0 1087
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium1929g00020 JmjC 6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1929g00020 K11446 - gmx:100800271 1952.56