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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vium1929g00020
ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGACAATGATGATTTTCCATCAGTTCCGCCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGATCAGTTGTTCCGCCTCAACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGAAACTGCAAAGGTTCCTAGATCCCTTCGAAGAAGACCGTGGATTAATTATGGACAGTATGAGAACCATTCAGAAGAAGACTCTGACTGTGAGCGGCTTGATCAAACTTTGTCCTCTAGGGCTTGTCTTCCTCGAGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCTGAAGATGCTCGTAGGCCAAATATTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCATATGGAATTTGCCGCATTGTTCCACCTTCTTCTTGGAAACCCCCCTGTCCTCTCAAGGAAAAAAGTAAATGGGAGGGTTCTAAGTTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAAATGTCAAGGGTTCAAAGTAACATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAAGAGGACCCAATACAGCATTTTGTGAAGTGGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAGCATTTCAGAGATATGCAGAAGATTTTCAGCTCCAATACTTCAGAAAAAATGAGAACGTATCTCATTTGGGTGGTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGAATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAGCTAGGTTCTGCTTCACATGAAAAATACATAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAGAGCAGTGATATATCTGGTGTTTTAGTGCCGTGGTTATACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTTGAAGACCACCATTTATATTCATTGAACTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGAGTCCCTGGAAGAGATGCCTGCAAATTAGAAGAGGCTATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAACTTTCTCCTTCTATCCTCAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTGCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCAGGGTTCAATTGCGGTTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGTTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTTCGAGCTCAATGGGAGCTTAATTTGCTAAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCTTTTTGGCCAAAGCACTTAAGATGCGTGTTGAGATGGAACGAGCAAGAAGAGAATTTCTCTGCAGTTCTCTACAGGCATTAAAAATGGAGAGTACCTTTGATGCTACGGATGAAAGGGAATGTAACATATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGCTTTGTTCATGCTCTTGGGATTCCAGATTTTTTCTCTTTCGGTATGATGTTGCTGAACTAAATATTCTGGTGGAGGCATTGGAAGGAAAATTAAGTGCAATCTACAGATGGGCAAAATCAGATCTTGGGCTGGCACTATCATCTGATGTTTCATCAGGCAAGGAAACAATACTTAAAGAATTGAAATCACATTCATCTAGTTTGTTTCATTCTTCCAGGGCCACTTTGAATAAAGAGACGGCTTTGCATCCACCAAATAAATATATTGATGATTCTCAATTGATTGACGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCTGAAGCTATTTCATTTTTGAGTTCAACTAAGGACTTGCTAACATTTAACAGCTCAAAACCTACATCTGATATTCCTAATCATAAGATCTGTGTTAGTAAGGAAGAATCTGTCATTTGCAGCTCAAAGAGGAAAACACCTGGTTGTCAATTGTCTCAGGAGGATACATCGTATGCTTTATCTACTCTAGCTCAACAAGGAGGTGATAAAAGTTCACTTTACAGGCATAACAACGTTATACTTCTTAGTGACGATGAAGAAGACGAAAAGATGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTATGCTTGTAGGTCCTGGAGATAAGTCAAGCCCATTTAACAATATAGAAAGTACAAACTTGACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAGGGATGCTATGACATTACCCCATGAAAATATGAGTTCTGATTCAATTCCGTCTTTGCGTGTGAAACAAGAATGTCATGAATACACAGGAACAGTTCTAGCCTCTACCCCACTAGATCTTTCTTGTCATATTGGTCTTACAAGTGCACAATGTACTAAAAATATTTCAGCTCCTTCAAAAGTAGAAGCAAGTGATCATTGTTTGGAAAGTTTGGTGATGTCTCCTCTGAACCTACAACTTTCTGGCACTAAGGTTAAGACTGAAGATAATCACGAAAAATTTGGAGGATGTTCCACTTCTAATGTAGCAGACAATGCGAGAGCTGTTAATGGGAACTTTTCTTCTGGTCCAAACAATTTCCGACAGAAAGGTCCTCGGATAGCGAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGGGTTGTGCTTTCTGGAAAGTCTTGGTGTAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGAGTTAGATACATAAATGTCTCAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTACTTTCACCTCTTTTTCAATTGCTAGCTTTTGTCATGCAATTTGGGCATATACATATATACATACATATATACATATATACATACATA
3354
0.4058
MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMISCSASTSASESPSTQVENDVQVRETAKVPRSLRRRPWINYGQYENHSEEDSDCERLDQTLSSRACLPRGVIRGCPDCSNCQKVVARWRPEDARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSKWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNTAFCEVERFGFEPGPEFTLEAFQRYAEDFQLQYFRKNENVSHLGGNTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQLGSASHEKYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGRDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGFLAKALKMRVEMERARREFLCSSLQALKMESTFDATDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQLCSCSWDSRFFLFRYDVAELNILVEALEGKLSAIYRWAKSDLGLALSSDVSSGKETILKELKSHSSSLFHSSRATLNKETALHPPNKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEAISFLSSTKDLLTFNSSKPTSDIPNHKICVSKEESVICSSKRKTPGCQLSQEDTSYALSTLAQQGGDKSSLYRHNNVILLSDDEEDEKMSDSNRRKELSSMLVGPGDKSSPFNNIESTNLTISVTDTAVMGERDAMTLPHENMSSDSIPSLRVKQECHEYTGTVLASTPLDLSCHIGLTSAQCTKNISAPSKVEASDHCLESLVMSPLNLQLSGTKVKTEDNHEKFGGCSTSNVADNARAVNGNFSSGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVSDPSSMCYYISEILDAGRGWPLFMVLSPLFQLLAFVMQFGHIHIYIHIYIYTYI
1118
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vium1929g00020
1118
SMART
JmjN_1
147
188
IPR003349
-
Vium1929g00020
1118
MobiDBLite
consensus disorder prediction
843
875
-
-
Vium1929g00020
1118
ProSiteProfiles
JmjC domain profile.
360
523
IPR003347
-
Vium1929g00020
1118
Pfam
F/Y-rich N-terminus
1035
1077
IPR003888
GO:0005634
Vium1929g00020
1118
SMART
cupin_9
360
523
IPR003347
-
Vium1929g00020
1118
SMART
fyrn_3
1036
1080
IPR003888
GO:0005634
Vium1929g00020
1118
MobiDBLite
consensus disorder prediction
37
75
-
-
Vium1929g00020
1118
ProSiteProfiles
JmjN domain profile.
148
189
IPR003349
-
Vium1929g00020
1118
Gene3D
Cupin
133
507
-
-
Vium1929g00020
1118
Pfam
jmjN domain
149
182
IPR003349
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vium1929g00020
Vium-Chr1929
136912
145276
Dispersed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vium1929g00020
2
1089
JUMONJI Transcription Factor Family
AT1G08620
55.655
0.0
1087
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
Jumonji
Vium1929g00020
JmjC
6e-46
CL0029
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vium1929g00020
K11446
-
gmx:100800271
1952.56
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