Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1929g00008 ATGTATGCATCTGAAAAAAATATTTACGAACGATTAGGTTTAAGAACCATGGAGGAAGTGGAGATAACAGAGGAAGAAGAAGACGAAGTTGTGGTTGCTCCAACTAACTTTTCAATGGTGGAAGAGGGTATTTTTCGCAGCAGTTTCCCTCGATCTTCAAATTTCTCTTTTCTTGAGACTCTGAATCTTCGTTCCGTCGTATATTTGTGCCCCGAACCCTATCCACAGCAAAATCTACAGTTTCTTCAATCGCAAAATATCAAGTTCTTCCACTTTGGTATTGAAGGCAAAACGGATCTTTCTGTGCCTGCCGTAAAGGATTTGATCTTGGAGGCCGTCAAAGTTTTGATTGACGTGAGAAATCACCCAGTTCTAGTCCACTGTAATCAAGGAAAGCATCGAACTGGTTGTGTTATTGGATGCTTCAGAAAACTGCAGCGTTGGTGTCTATCTTCTGTGTTTGAGGAGTACAAGAAATTTGCTGGAGCTAAATCCAGAACGACTGATTTAAGTTTCATAGAAACGGTTGATCTCTTAAACCTGAGAAAGTGTCTTAACAGCATCATATACCAATACCTAGGACATTCTTCAAAGAAACGCAAGTTGCTGTACAGAGATGATAATCTCAAGGTCCACTTGACATCAGTTTAG 651 0.4009 MYASEKNIYERLGLRTMEEVEITEEEEDEVVVAPTNFSMVEEGIFRSSFPRSSNFSFLETLNLRSVVYLCPEPYPQQNLQFLQSQNIKFFHFGIEGKTDLSVPAVKDLILEAVKVLIDVRNHPVLVHCNQGKHRTGCVIGCFRKLQRWCLSSVFEEYKKFAGAKSRTTDLSFIETVDLLNLRKCLNSIIYQYLGHSSKKRKLLYRDDNLKVHLTSV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1929g00008 216 PANTHER TYROSINE-PROTEIN PHOSPHATASE 26 191 - -
Vium1929g00008 216 FunFam probable tyrosine-protein phosphatase At1g05000 30 180 - -
Vium1929g00008 216 ProSitePatterns Tyrosine specific protein phosphatases active site. 126 136 IPR016130 GO:0016311|GO:0016791
Vium1929g00008 216 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 185 IPR020422 GO:0006470|GO:0008138
Vium1929g00008 216 Pfam Tyrosine phosphatase family 31 177 IPR004861 -
Vium1929g00008 216 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 32 174 IPR029021 -
Vium1929g00008 216 Gene3D Protein tyrosine phosphatase superfamily 30 179 IPR029021 -
Vium1929g00008 216 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 139 IPR000387 GO:0016311|GO:0016791
Vium1929g00008 216 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Vium1929g00008 216 PRINTS Plant and fungal dual specificity phosphatase signature 104 118 IPR020428 GO:0016791
Vium1929g00008 216 PRINTS Plant and fungal dual specificity phosphatase signature 68 81 IPR020428 GO:0016791
Vium1929g00008 216 PRINTS Plant and fungal dual specificity phosphatase signature 31 48 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1929g00008 Vium-Chr1929 39321 41702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1929g00008 23 211 Protein tyrosine phosphatase (PTP) family AT3G02800 60.847 9.23e-93 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1929g00008 K18045 - gmx:100808199 326.635