Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1929g00007 ATGGAGAAGAAGAAGCTCAACGTCATCATCCCTGATGCTCAACCTCATGGAATCATTCCACGCCGCAATTCCCCTATCTCTCAAAGACAAGATTCACTGTGGATGATGAATTTGAGGAGTGGCGAAACAATGGATTCTGGAGCTTATCCGGAACGTCCAGGGGAGCCAGACTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGTTTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCTACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGCGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGACCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGAAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACAGGATTCTTCTGTTTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCGTATGCAGGAGGAATTACAAATTGGTCAAGGGCATCATACATCCCTAGTCTTCGCTGGCAGGGTCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCGGTGCCTGGGTGGAGTGCATATGGTGGTCAAGTGGGATCAATCTCTACTTCAGACAGTCATCAGCAAGTAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACGCAGGATCACATGGAGCATACTCTCAATTCCGTTCTGGCACTGTTCCAGAAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGATCAACCAGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCAAGCGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCGGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATCTCTTCATCGCCTTCAGCTGATGCCCAGAGCAGGCATCTGCTACGATCTTCATCAGGAACTGCTGCGTTAAATTTATCTTCGGAAGGACTTGGTGAATCGAGCTCAGCAACGCCCAGGCGGCTTTCATTATCAGAGACAAGACAGATACCATCTGGTGATGATGACATTGATGATGATGGATGA 1335 0.4562 MEKKKLNVIIPDAQPHGIIPRRNSPISQRQDSLWMMNLRSGETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNTLGYPLRPNDPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSYAGGITNWSRASYIPSLRWQGPSSYAPLILPQGVVSVPGWSAYGGQVGSISTSDSHQQVMRNGQTYGTSRQGELANAGSHGAYSQFRSGTVPEGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPSERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISSSPSADAQSRHLLRSSSGTAALNLSSEGLGESSSATPRRLSLSETRQIPSGDDDIDDDG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1929g00007 444 FunFam Zinc finger nuclease 2 51 128 - -
Vium1929g00007 444 SUPERFAMILY CCCH zinc finger 147 171 IPR036855 GO:0046872
Vium1929g00007 444 SUPERFAMILY CCCH zinc finger 353 377 IPR036855 GO:0046872
Vium1929g00007 444 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Vium1929g00007 444 Gene3D - 296 379 - -
Vium1929g00007 444 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Vium1929g00007 444 Gene3D - 129 180 - -
Vium1929g00007 444 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Vium1929g00007 444 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Vium1929g00007 444 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Vium1929g00007 444 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Vium1929g00007 444 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Vium1929g00007 444 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Vium1929g00007 444 MobiDBLite consensus disorder prediction 408 444 - -
Vium1929g00007 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 170 IPR000571 GO:0046872
Vium1929g00007 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Vium1929g00007 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Vium1929g00007 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Vium1929g00007 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Vium1929g00007 444 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Vium1929g00007 444 PANTHER PROTEIN PHOSPHATASE RELATED 40 396 - -
Vium1929g00007 444 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Vium1929g00007 444 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Vium1929g00007 444 Gene3D - 50 128 - -
Vium1929g00007 444 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Vium1929g00007 444 MobiDBLite consensus disorder prediction 408 433 - -
Vium1929g00007 444 SUPERFAMILY CCCH zinc finger 307 333 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1929g00007 Vium-Chr1929 29335 34545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1929g00007 33 443 C2H2 Transcription Factor Family AT3G02830 59.762 2.89e-171 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1929g00007 zf-CCCH 5.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1929g00007 - - ccaj:109816515 795.038