Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1929g00006 ATGGAGAAGAAGAAGCTCAACGTCATCATCCCTGATGCTCAACCTCATGGAATCATTCCACGCCGCAATTCCCCTATCTCTCAAAGACAAGGTTTGGTATTTGTAGCCACTGTGTGCATTGATGATGTGGCTTCAGTTTCGCTTACATCATGCTGTTCACGCGTGTATGATGTTGTTTCAGATTCACTGTGGATGATGAATTTGAGGAGTGGCGAAACAATGGATTCTGGAGCTTATCCGGAACGTCCAGGGGAGCCAGACTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGTTTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCTACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGCGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGACCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGAAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACAGGATTCTTCTGTTTACCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCGTATGCAGGAGGAATTACAAATTGGTCAAGGGCATCATACATCCCTAGTCTTCGCTGGCAGGGTCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCGGTGCCTGGGTGGAGTGCATATGGTGGTCAAGTGGGATCAATCTCTACTTCAGACAGTCATCAGCAAGTAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACGCAGGATCACATGGAGCATACTCTCAATTCCGTTCTGGCACTGTTCCAGAAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGATCAACCAGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCAAGCGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCGGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATCTCTTCATCGCCTTCAGCTGATGCCCAGAGCAGGCATCTGCTACGATCTTCATCAGGAACTGCTGCGTTAAATTTATCTTCGGAAGGACTTGGTGAATCGAGCTCAGCAACGCCCAGGCGGCTTTCATTATCAGAGACAAGACAGATACCATCTGGTGATGATGACATTGATGATGATGGATGA 1425 0.4547 MEKKKLNVIIPDAQPHGIIPRRNSPISQRQGLVFVATVCIDDVASVSLTSCCSRVYDVVSDSLWMMNLRSGETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNTLGYPLRPNDPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSYAGGITNWSRASYIPSLRWQGPSSYAPLILPQGVVSVPGWSAYGGQVGSISTSDSHQQVMRNGQTYGTSRQGELANAGSHGAYSQFRSGTVPEGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPSERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISSSPSADAQSRHLLRSSSGTAALNLSSEGLGESSSATPRRLSLSETRQIPSGDDDIDDDG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1929g00006 474 ProSiteProfiles Zinc finger C3H1-type profile. 380 408 IPR000571 GO:0046872
Vium1929g00006 474 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Vium1929g00006 474 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Vium1929g00006 474 SMART c3hfinal6 334 361 IPR000571 GO:0046872
Vium1929g00006 474 SMART c3hfinal6 82 109 IPR000571 GO:0046872
Vium1929g00006 474 SMART c3hfinal6 380 407 IPR000571 GO:0046872
Vium1929g00006 474 SUPERFAMILY CCCH zinc finger 177 201 IPR036855 GO:0046872
Vium1929g00006 474 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Vium1929g00006 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 109 IPR000571 GO:0046872
Vium1929g00006 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 177 200 IPR000571 GO:0046872
Vium1929g00006 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 382 407 IPR000571 GO:0046872
Vium1929g00006 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 336 360 IPR000571 GO:0046872
Vium1929g00006 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 154 IPR000571 GO:0046872
Vium1929g00006 474 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Vium1929g00006 474 MobiDBLite consensus disorder prediction 438 463 - -
Vium1929g00006 474 SUPERFAMILY CCCH zinc finger 131 156 IPR036855 GO:0046872
Vium1929g00006 474 ProSiteProfiles Zinc finger C3H1-type profile. 334 362 IPR000571 GO:0046872
Vium1929g00006 474 SUPERFAMILY CCCH zinc finger 383 407 IPR036855 GO:0046872
Vium1929g00006 474 FunFam Zinc finger nuclease 2 81 158 - -
Vium1929g00006 474 SUPERFAMILY CCCH zinc finger 87 110 IPR036855 GO:0046872
Vium1929g00006 474 Gene3D - 163 210 - -
Vium1929g00006 474 Gene3D - 327 409 - -
Vium1929g00006 474 ProSiteProfiles Zinc finger C3H1-type profile. 82 110 IPR000571 GO:0046872
Vium1929g00006 474 MobiDBLite consensus disorder prediction 438 474 - -
Vium1929g00006 474 Gene3D - 80 162 - -
Vium1929g00006 474 PANTHER PROTEIN PHOSPHATASE RELATED 72 426 - -
Vium1929g00006 474 SUPERFAMILY CCCH zinc finger 337 363 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1929g00006 Vium-Chr1929 29335 34547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1929g00006 63 473 C2H2 Transcription Factor Family AT3G02830 59.762 7.28e-171 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1929g00006 zf-CCCH 5.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1929g00006 - - ccaj:109816515 783.482