Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1928g00005 ATGAAGATTGCATCTCACTCCGACATCACTGAAGCAGTCCAGCCTCTCCTGTCGCCGGAATGCGAGCACTCGGCGGAGGATCGGGGTGCGCCGAATGGGTCAATCAGCGGAGCGGTGTTCAACATATCGACGACCATGATCGGTGCCGGAATCATGTCGGTTCCGGCGACGATGAAGGTGCTGGGCATAGTTCCGGGGTTCCTGGTGATCCTGTTGGTGGCACTTGTAACAGATGTGACCGTGGAATTTATGCTGAGGTACACGAGTTCCGGAAAATCCACTACTTACGCGGGCATGATGGGGGAATCGTTTGGGTCCGTTGGATCCCTCGCCGTTAAGATTTGCGTTCTCATAACCAATTTCGGAATCCTCATTATATATCTCATTATTCTAGGAGACGTGCTGTGTGGAAATGAGTCCAACGGAACTACACACTTGGGTGTTCTACAAGAATGGTTTGGCATCCATTGGTGGACCTCTCGTGCTTTTACTCTTCTTATTGTTGCTCTCTTCATAATGCTTCCACTCGTTATGTTACGTCGTGTTGATTCACTGAGGTATACTTCTGCAATATCAATCCTACTAGCATTGGTCTTTCTTGCAATATGCTCATCAATGGCGTTTAGTGCATTGTTGTCCGGCAAAACTCAATCACTAAGGATGGTGCCTGATTTCTCTCTAGTCACTGTCCTTGATCTTTTCACCACTATCCCTGTCTTTGTCACTGGTTTCGGATTCCATGTCAATGTTCATCCAATTAGAGCAGAGATTGGAAAAGTTACAGACATGGGTAAGGCTGTGAAGATTTCATTAGTAATATGCGTGGTTGTTTACTTTGCCATTGGCTTCTTTGCGTACCTATTATTTGGGGACTCCATCATGCCCGATGTGTTAGTAAACTTTGATCAAAACTCCAATACCCATGTTGGTCGATTGCTGAACGATATTGTTAGAATAAGCTATGCACTCCATCTTGCCCTTGTCTTCCCCATCATGAACTATTCCTTGAGGATCAACATAGATGAACTTATTTTCTCAAACAAAAATAAACCTCCCTTGGCTTCAGACACCCCAAGATTTGTGTCACTCACTTTGTCTTTGCTAGTCCTCACATACTTGGTGGCTGTTGCCATCCCAAACATTTGGTATTTCTTCCAGTTCTTGGGATCCACAACCGTTGTTTGCACCTCATTCATCTTTCCTGCTGCAATAGTTCTAAGGGACATGCATGGCATATCAAAGACAAAAGATCGAGTCATTGCAATTTCGGTCATTGTTTTTGCTGTTGGGACAAGCGGAATTGCTATATGGACCAACTTGAATCCAGGGGATGGTTAA 1338 0.4507 MKIASHSDITEAVQPLLSPECEHSAEDRGAPNGSISGAVFNISTTMIGAGIMSVPATMKVLGIVPGFLVILLVALVTDVTVEFMLRYTSSGKSTTYAGMMGESFGSVGSLAVKICVLITNFGILIIYLIILGDVLCGNESNGTTHLGVLQEWFGIHWWTSRAFTLLIVALFIMLPLVMLRRVDSLRYTSAISILLALVFLAICSSMAFSALLSGKTQSLRMVPDFSLVTVLDLFTTIPVFVTGFGFHVNVHPIRAEIGKVTDMGKAVKISLVICVVVYFAIGFFAYLLFGDSIMPDVLVNFDQNSNTHVGRLLNDIVRISYALHLALVFPIMNYSLRINIDELIFSNKNKPPLASDTPRFVSLTLSLLVLTYLVAVAIPNIWYFFQFLGSTTVVCTSFIFPAAIVLRDMHGISKTKDRVIAISVIVFAVGTSGIAIWTNLNPGDG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1928g00005 445 Pfam Transmembrane amino acid transporter protein 33 434 IPR013057 -
Vium1928g00005 445 PANTHER AMINO ACID TRANSPORTER 27 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1928g00005 Vium-Chr1928 28046 31023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1928g00005 9 440 Amino Acid or Auxin Permease AAAP Family AT3G56200 52.995 7.85e-157 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1928g00005 - - gmx:100794031 691.419