Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1928g00004 ATGTCGCCTGTGACCGGAGCTCGTGTTCCTCTACTCCCTGACTCTAAGGGTGGTGTTCCTCCGGCAACAATTTCTGGTGCTGTGTTCAATGTTGCCAACAGCATAATCGGAGCTGGCATAATGTCTCTTCCGGCAACCTTGAAGGTTCTTGGTGTGATTCCAGCTTTGGTGTTGATTCTTGTGATTGCGTTTCTGGCTGAACTTTCTGTAGAGTTCCTGATGAGGTTCACGCGTGCTGGACAAACGACAACATATGCTGGTGTGATGAGAGAGGCATTTGGACCAGTGGGAGCTGTAGCAGCTCAGATAGCTGTTGGATTTACTAAAATGGGGTGTTTAATTATGTACCTTATTATTGCTGCGGATGTGTTTTCTGGTAATAATCGCCAAGGAGAAGTACACTTGGGTGTTTTGCAACAATGGTTTGGAGTTCACTGGTGGAATTCAAGGGAATTTACTTTGTTAGTGATCTTGCTCTTAATTTTGCTTCCATTGGTCTTGTACCGTCGTGTAGAGTCGTTGAAGTTCAGCTCTGCAATATCAACTTTTCTTGCTGTGGCCTTTGTTACAACTTGTACTGTGTTGGCCATAATTGCTATTGTAGAAGGAAGAACACAGTCTCCTAAATTGATTCCTCATTTGGACGAACAGACCACTTTCTTCGACCTGTTTACTGCAGTTCCAGTGATTGTCACAGCTTACACATTTCATTTTAATGTACATCCAATTGGATTTGAGCTTGCTAATGCATCAGATATGACAACAGCAGTTCGATTAGCATTACTGCTTTGTGCAGCTATTTACTTTTCTATAGGACTATTTGGGTATCTCTTGTTTGGGGATTCCACACAATCTGATATTCTGGTAAATTTTGACCAGAATACTGGATCTGCAGTTGGTTCTTTGCTCAATGTTTTAGTTCGATTAAGCTATGGATTGCATGTTATACTCACTTTTCCAGTTTTGAACTTCTCCTTAAGAACCAACATAGATGAATTCCTCTTTCCCAAGAAGCCTCTATTAGCCACTGACTCTAAGAGATTTGTGAGTCTCACTGTAGTTTTACTAGTCTTGAGCTACCTTGCTGCTGTAGCAGTCCCAGATATTTGGTACATCTTTCAGTTTGTGGGATCAACATCTACTGTGTGTCTTTCCTTTGTCTTCCCTGGTGCTATTGTTCTAAGGGATTTATACGGTATAGCAACTAGAAGGGACAAAATCATTGCACTGTTTATGGTCATACTAGCTGCAATAACAAGTGTGATTGCAATCTCCACCAACATATACAAAGCTTTTCAGTAG 1302 0.4147 MSPVTGARVPLLPDSKGGVPPATISGAVFNVANSIIGAGIMSLPATLKVLGVIPALVLILVIAFLAELSVEFLMRFTRAGQTTTYAGVMREAFGPVGAVAAQIAVGFTKMGCLIMYLIIAADVFSGNNRQGEVHLGVLQQWFGVHWWNSREFTLLVILLLILLPLVLYRRVESLKFSSAISTFLAVAFVTTCTVLAIIAIVEGRTQSPKLIPHLDEQTTFFDLFTAVPVIVTAYTFHFNVHPIGFELANASDMTTAVRLALLLCAAIYFSIGLFGYLLFGDSTQSDILVNFDQNTGSAVGSLLNVLVRLSYGLHVILTFPVLNFSLRTNIDEFLFPKKPLLATDSKRFVSLTVVLLVLSYLAAVAVPDIWYIFQFVGSTSTVCLSFVFPGAIVLRDLYGIATRRDKIIALFMVILAAITSVIAISTNIYKAFQ 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1928g00004 433 Pfam Transmembrane amino acid transporter protein 23 417 IPR013057 -
Vium1928g00004 433 PANTHER AMINO ACID TRANSPORTER 20 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1928g00004 Vium-Chr1928 20007 22491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1928g00004 22 430 Amino Acid or Auxin Permease AAAP Family AT3G56200 59.413 9.29e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1928g00004 - - gmx:100800330 691.034