Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1927g00010 ATGAAGACTTTAGGGTTGTCGCATCTTCTCCAAATTCTTACCTGCACTCTGCTACTCACTCCGTCATTTTCTAAAGATGATCGAAAGATTTACATAGTCTACATGGGTGAATATCCGAAGGGCATGGAACTCACAGAATCACTGCATACTAGTATGGTTCAAAGTGTCATCAGCAGAAAACTTGCACCAGATACTTTGGTTCACAGCTACAAGAGTTTCAATGGATTTGTGGCGAGACTAACCAAAGAAGAATCAGAAAGAATGAAAGGAAGGGATGATGTGGTTTCTGTTATTCCAAATAGAGTCCACAGTGTCCAAACATCAAGGTCCTGGGACTTTCTTGGCTTCCCTGAAAATGTCCAAAGAACAAAGGTAGAAAGTAACACAATCGTTGGAGTACTCGACAGTGGAATTTGGCCTAATTCCTCAAGCTTCACCGACGAAGGCTTTGGTCCTCCACCACAGAAATGGAAAGGAACATGTCATAACTTCACTTGCAATAACAAAATCATTGGAGCAAAATATTTTCGTCTTGATGGTGTGTTCGCCCAAGAGGACATCATATCTCCAACTGATAACATTGGTCACGGGTCTCACTGTGCATCAACAGCTGCTGGAAACCCTGTTAGGAATGCAAGTTTGTTTGGGCTTGGCTTAGGAACAGCAAGAGGAGGAGTTCCGTCAGCACGTATTGCTGTGTATAAAGTTTGTTGGACAAATGGTTGTAGAACTGCTGACATTCTTGCAGGATTTGATGCAGCCATTATGGATGGTGTTGACATTATATCTCTTTCAGTGGGACATAAACACGTCAAACACCTGAAATATTTTGAAGATGAATTTGCAATAGGAGCCTTCCATGCAATAAAGAGAGGCATATTAACTTCCCAAGCTGCAGGCAATTCGGGTTCAAAACCTTACACAATGTCAAATCTTGCACCGTGGATAATTTCCGTGGCTGCTTCCACCATAGACAGAAATTTTTTAACCAATCTCCAACTGGGCAATGGCCGAATCTTCCATGGAATTTCACTGAATACATTTAGTCCACAGAAGAGTTACCCTTTAATTTATGGGGGAGATGCACCGGCTGCAGGATTTAATAGATCCACATCGAGGTTTTGCCGTGAAAATTCTTTGGATGGAGCTTTGGTGAAAGGGAAAATTGTTTTGTGTCATGGCTATACTCCTTCTCAATATGTGGGATTTGCTTCTGGGGCTGCTGGTCTTATATTCAGTAGTACATTGCCTTTAGTTGGGGCAGGTGTATTTGCATTGCCAGCGATTCGCATCACCGCAAGTGATGGGAATTCCGTATCTTCTTATTTAAAGTCAACAAGTAATCCAGCAGCTACCATATTCAAGAGTTACGAAGGAAAAGATTCATCAGCCCCTTACATTGCTCCTTTCTCATCGAGAGGTCCAAATATGGTCACTCCAAACATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTCAAATTCTGGCTGCATGGCCTCCGATTTCTCCTGTTTCTCGCTTTAAAGGAGACAAAAGAGTATCAAATTTCAGTATATTATCTGGAACTTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCTATAAAATCCGCGTTGATGACAACTGCTACTCCTATGAATCCTGCACTGAATGTAGATGCTGAATTTTCTTACGGTGCGGGGCAACTCAATCCTTTGAAAGCAGTAAATCCTGGACTAGTTTATGATGTTGATGAATATGATTATATTAGTTTTCTGTGTGGACAAGGTTACAATTCATCAGCGCTGCGAATAATTACCGGAGCTGATATAATTTGCACATCAGCAAATACAGAGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTCGCTCAAGCCACAACAATGTCACTTTTGTTAGAACTGTTACAAATGTTGGATCAGTTACATCCAAATATAGGGCCACGATAACTGCACATCCATCTTCTTTGAAGGTCGAAGTAGTGCCAAATGTTTTGGCCTTCTCATCGTTGGGTCAGAAGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCAGACTTGGTTTCTTTTTCTTTGATTTGGGATGATGGCACTCTTAAGGCAAGGAGCCCCGTTGTTGTTTATTTTAGTCCAACACAGAAGAGTTACCCTTTAATTTATGGGGGAGATGCACCAGCTGCTGGATTTAACAGTTCCACATCGAGGTTTTGCCGTGAAAATTCTTTGGATGGAGCTTTGGTGAAAGGGAAAATTGTTTTGTGTCATGGCTATACTCCTTCTCAATATGTGGGATTTGCTTCTGGGGCTGCTGGTCTTATATTCAGTAGTACATTGCCTTTAGTTGGGGCAGGTGTATTTGCATTGCCAGCGATTCGCATCACCGCAAGTGATGGGAATTCCGTATCTTCTTATTTAAAGTCAACAAGTAATCCAGCAGCTACCATATTCAAGAGTTACGAAGGAAAAGATTCATCAGCCCCTTACATTGCTCCTTTCTCATCGAGAGGTCCAAATATGGTCACTCCAAACATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTCAAATTCTGGCTGCATGGCCTCCGATTTCTCCTGTTTCTCGCTTTAAAGGAGACAAAAGAGTATCAAATTTCAGTATATTATCTGGAACTTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCTATAAAATCCGCGTTGATGACAACTGCTACTCCTATGAATCCTGCACTGAATGTAGATGCTGAATTTTCTTACGGTGCGGGGCAACTCAATCCTTTGAAAGCAGTAAATCCTGGACTAGTTTATGATGTTGATGAATATGATTATATTAGTTTTCTGTGTGGACAAGGTTACAATTCATCAGCGCTGCGAATAATTACCGGAGCTGATATAATTTGCACATCAGCAAATACAGAGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTCGCTCAAGCCACAACAATGTCACTTTTGTTAGAACTGTTACAAATGTTGGATCAGTTACATCCAAATATAGGGCCACGATAACTGCACATCCATCTTCTTTGAAGGTCGAAGTAGTGCCAAATGTTTTGGCCTTCTCATCGTTGGGTCAGAAGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCAGACTTGGTTTCTTTTTCTTTGATTTGGGATGATGGCACTCTTAAGGCAAGGAGCCCCGTTGTTGTTTATGTTCCATAA 3333 0.4173 MKTLGLSHLLQILTCTLLLTPSFSKDDRKIYIVYMGEYPKGMELTESLHTSMVQSVISRKLAPDTLVHSYKSFNGFVARLTKEESERMKGRDDVVSVIPNRVHSVQTSRSWDFLGFPENVQRTKVESNTIVGVLDSGIWPNSSSFTDEGFGPPPQKWKGTCHNFTCNNKIIGAKYFRLDGVFAQEDIISPTDNIGHGSHCASTAAGNPVRNASLFGLGLGTARGGVPSARIAVYKVCWTNGCRTADILAGFDAAIMDGVDIISLSVGHKHVKHLKYFEDEFAIGAFHAIKRGILTSQAAGNSGSKPYTMSNLAPWIISVAASTIDRNFLTNLQLGNGRIFHGISLNTFSPQKSYPLIYGGDAPAAGFNRSTSRFCRENSLDGALVKGKIVLCHGYTPSQYVGFASGAAGLIFSSTLPLVGAGVFALPAIRITASDGNSVSSYLKSTSNPAATIFKSYEGKDSSAPYIAPFSSRGPNMVTPNILKPDIAAPGVQILAAWPPISPVSRFKGDKRVSNFSILSGTSMACPHVTAAAAYVKSFHPNWSPAAIKSALMTTATPMNPALNVDAEFSYGAGQLNPLKAVNPGLVYDVDEYDYISFLCGQGYNSSALRIITGADIICTSANTESVFNLNLPSFALSTPRSSHNNVTFVRTVTNVGSVTSKYRATITAHPSSLKVEVVPNVLAFSSLGQKLSFTLKIEGSINADLVSFSLIWDDGTLKARSPVVVYFSPTQKSYPLIYGGDAPAAGFNSSTSRFCRENSLDGALVKGKIVLCHGYTPSQYVGFASGAAGLIFSSTLPLVGAGVFALPAIRITASDGNSVSSYLKSTSNPAATIFKSYEGKDSSAPYIAPFSSRGPNMVTPNILKPDIAAPGVQILAAWPPISPVSRFKGDKRVSNFSILSGTSMACPHVTAAAAYVKSFHPNWSPAAIKSALMTTATPMNPALNVDAEFSYGAGQLNPLKAVNPGLVYDVDEYDYISFLCGQGYNSSALRIITGADIICTSANTESVFNLNLPSFALSTPRSSHNNVTFVRTVTNVGSVTSKYRATITAHPSSLKVEVVPNVLAFSSLGQKLSFTLKIEGSINADLVSFSLIWDDGTLKARSPVVVYVP 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1927g00010 1110 Pfam Subtilase family 613 953 IPR000209 GO:0006508|GO:0008236
Vium1927g00010 1110 CDD PA_subtilisin_like 728 834 - -
Vium1927g00010 1110 ProSitePatterns Serine proteases, subtilase family, serine active site. 902 912 IPR023828 -
Vium1927g00010 1110 CDD Peptidases_S8_3 105 557 IPR034197 -
Vium1927g00010 1110 Pfam Fibronectin type-III domain 629 726 IPR041469 -
Vium1927g00010 1110 Pfam Fibronectin type-III domain 1010 1107 IPR041469 -
Vium1927g00010 1110 Gene3D - 325 460 - -
Vium1927g00010 1110 Pfam Subtilase family 127 572 IPR000209 GO:0006508|GO:0008236
Vium1927g00010 1110 Gene3D Peptidase S8/S53 domain 801 979 IPR036852 GO:0004252|GO:0006508
Vium1927g00010 1110 SUPERFAMILY Subtilisin-like 106 586 IPR036852 GO:0004252|GO:0006508
Vium1927g00010 1110 CDD PA_subtilisin_like 331 453 - -
Vium1927g00010 1110 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 726 IPR045051 -
Vium1927g00010 1110 Gene3D - 980 1109 - -
Vium1927g00010 1110 Gene3D - 599 728 - -
Vium1927g00010 1110 Gene3D Peptidase S8/S53 domain 129 595 IPR036852 GO:0004252|GO:0006508
Vium1927g00010 1110 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 105 IPR037045 -
Vium1927g00010 1110 FunFam Subtilisin-like protease SBT1.5 128 337 - -
Vium1927g00010 1110 ProSitePatterns Serine proteases, subtilase family, histidine active site. 196 206 IPR022398 -
Vium1927g00010 1110 PRINTS Subtilisin serine protease family (S8) signature 126 145 IPR015500 -
Vium1927g00010 1110 PRINTS Subtilisin serine protease family (S8) signature 192 205 IPR015500 -
Vium1927g00010 1110 PRINTS Subtilisin serine protease family (S8) signature 520 536 IPR015500 -
Vium1927g00010 1110 SUPERFAMILY Subtilisin-like 848 967 IPR036852 GO:0004252|GO:0006508
Vium1927g00010 1110 Pfam Peptidase inhibitor I9 31 102 IPR010259 -
Vium1927g00010 1110 ProSitePatterns Serine proteases, subtilase family, serine active site. 521 531 IPR023828 -
Vium1927g00010 1110 ProSiteProfiles Serine proteases, subtilase domain profile. 110 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1927g00010 Vium-Chr1927 144424 154397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1927g00010 27 727 Subtilisin-like Serine Gene Family AT5G59100 47.427 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1927g00010 - - vum:124828449 2190.23