Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1927g00008 ATGAACGTAAAACTTGCCCCAGATACTTTGCTTCACAGCTACAAGAGTTTCAATGGATTTGTAGCGAGGCTGACCAAGGAAGAATCAGAAAGAATGAAAGGAATGGATGAGGTGGTTTCTGTCATTCCAAATAGAATCCACAGTATCCAAACAACAAGGTCCTGGAACTTCATTGGCTTCCCTGAAAATGTCCAAAGGTCAAAGGTAGAAAGTGACACAATCGTTGGAATACTCGATACTGGAATTTGGCCAAATTCCTCAAGCTTCAGCGACAGAGGCCTTGGTCCACCACCACAGAGATGGAAAGGATCATGCCAAAACTTCACTTGTAATAACAAAATAATTGGAGCAAAATATTTTCGGGTTGATGCTGATATTGCCGACATCATATCTCCCGTTGATACGTTGGGTCACGGGTCTCACACTGCATCGACTGCTGCTGGAAACTCTGTTAGCAATGCAAATCTGTTCGGGCTTGGCACAGGAACACTGAGAGGAGAAGTTCCATCAGCACGCATTGCTGTGTATAAAGTCTGTTGGAAGACTGGTTGTAGTAATGCTGACATTTTAGCAGGATTTGATGCAGCCATTCAGGATGGTGTTGACATTATATCTGTTTCATTGGGACCTAGAATGGTCACATTCACCGATTATTTTGATGATGAATTTGCAATAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTAAAGCTGCAGGCAATGCTGGTCCACACCGTGGCACAATGACAAATCCTGCACCCTGGATCATTACCGTGGCTGCTTCCACTACAGACAGAAAGTTTTCGACCAAACTCCAACTGGGCAATGGCCGAATCTTCCATGGAATCTCATTGAATACGTTTAGTCCAACACAGAAAAGTTACCCTTTAATTTATGCTGGAGATGCTGGTAGAAGGAATAATTCCATGTCCAGGTTTTGCCGTGAAAATGATTTGGATGGAGCTTTGGTGAAAGGGAAAATTGTTTTGTGTGATGGCTATACTCCTTCTCAATATGTGGGATTAGCTTCTGGGGCTGCTGGTCTTATATTCACTGCTACATTGACTTCAGTTTCGGTAGAGGCATTTGCAATGCCAACAATTCAAATTACCCCAAGTGATGGGAATTCTGTATCTTCTTATTTAAAGTCAACGAGAAATCCAACAGCTACCGTATTCAAAAGTATCGAAGGAAAAGATTCATCAGCCCCTTACATTGCTACATTCTCAGCGAGAGGTCCAAATACAGTCACTCCAAACATTCTTAAGCCTGACATAGCAGCTCCAGGGGTTAATATTCTGGCTGCATGGTCTTCGGTTTCACCTATTTCTGGTGTTCGAGGAGATACAAGAGTATCGACTTTGAATATAATATCTGGAACTTCCATGGCATGCCCTCATGTTTCTGGAGCAGCTGCTTACGTCAAATCTAATCATCCCAACTGGTCTCCTGCTGCAATAAAATCCGCGTTGATGACAACTGCTACCCCTATGAATCCTACAGTTGATTTAGATGCTGAATTTGCTTACGGTGCGGGGCAAATCAATCCTTTGAAGGCAGCAAATCCTGGACTAGTTTATGATGCTGGTGAAAACGATTATATTAGTTTTCTGTGTGGACAAGGTTACAATTCATCATCGCTGCAACTAATTACAGGAGATAAGAGCACTTGCACATCAGCAAATAAAGGATCGGTTTTCGACCTTAATCTCCCGTCTTTTACTCTATCAACCCCTCGCTCAAGCCACAACAATGTCACTTTTAATAGAACTGTTACAAATGTTGGATCAGCTACATCCAAATATAGGGCCACGATAACTGCACATCCATCTTCTTTGAAGGTCGAAGTAGTGCCAAATGTTTTGGCCTTCTCATCGTTGGGTCAGAAGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCAGATTTGGTTTCTTTTTCTATGATTTGGGACGATGGCACTTTTAAGGCAAGGAGCCCTGTTGTTGTTTATGCTCCATAA 2013 0.4242 MNVKLAPDTLLHSYKSFNGFVARLTKEESERMKGMDEVVSVIPNRIHSIQTTRSWNFIGFPENVQRSKVESDTIVGILDTGIWPNSSSFSDRGLGPPPQRWKGSCQNFTCNNKIIGAKYFRVDADIADIISPVDTLGHGSHTASTAAGNSVSNANLFGLGTGTLRGEVPSARIAVYKVCWKTGCSNADILAGFDAAIQDGVDIISVSLGPRMVTFTDYFDDEFAIGAFHAMKRGILTSKAAGNAGPHRGTMTNPAPWIITVAASTTDRKFSTKLQLGNGRIFHGISLNTFSPTQKSYPLIYAGDAGRRNNSMSRFCRENDLDGALVKGKIVLCDGYTPSQYVGLASGAAGLIFTATLTSVSVEAFAMPTIQITPSDGNSVSSYLKSTRNPTATVFKSIEGKDSSAPYIATFSARGPNTVTPNILKPDIAAPGVNILAAWSSVSPISGVRGDTRVSTLNIISGTSMACPHVSGAAAYVKSNHPNWSPAAIKSALMTTATPMNPTVDLDAEFAYGAGQINPLKAANPGLVYDAGENDYISFLCGQGYNSSSLQLITGDKSTCTSANKGSVFDLNLPSFTLSTPRSSHNNVTFNRTVTNVGSATSKYRATITAHPSSLKVEVVPNVLAFSSLGQKLSFTLKIEGSINADLVSFSMIWDDGTFKARSPVVVYAP 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1927g00008 670 FunFam Subtilisin-like protease SBT1.5 72 280 - -
Vium1927g00008 670 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 2 49 IPR037045 -
Vium1927g00008 670 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 10 667 IPR045051 -
Vium1927g00008 670 SUPERFAMILY Subtilisin-like 50 527 IPR036852 GO:0004252|GO:0006508
Vium1927g00008 670 Pfam Peptidase inhibitor I9 7 46 IPR010259 -
Vium1927g00008 670 PRINTS Subtilisin serine protease family (S8) signature 134 147 IPR015500 -
Vium1927g00008 670 PRINTS Subtilisin serine protease family (S8) signature 461 477 IPR015500 -
Vium1927g00008 670 PRINTS Subtilisin serine protease family (S8) signature 70 89 IPR015500 -
Vium1927g00008 670 CDD PA_subtilisin_like 274 394 - -
Vium1927g00008 670 ProSitePatterns Serine proteases, subtilase family, serine active site. 462 472 IPR023828 -
Vium1927g00008 670 ProSiteProfiles Serine proteases, subtilase domain profile. 54 523 - -
Vium1927g00008 670 Gene3D - 267 401 - -
Vium1927g00008 670 Pfam Subtilase family 71 515 IPR000209 GO:0006508|GO:0008236
Vium1927g00008 670 Gene3D Peptidase S8/S53 domain 72 536 IPR036852 GO:0004252|GO:0006508
Vium1927g00008 670 Gene3D - 540 669 - -
Vium1927g00008 670 CDD Peptidases_S8_3 49 498 IPR034197 -
Vium1927g00008 670 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 75 85 IPR023827 -
Vium1927g00008 670 Pfam Fibronectin type-III domain 570 667 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1927g00008 Vium-Chr1927 127418 135992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1927g00008 5 669 Subtilisin-like Serine Gene Family AT5G59100 47.291 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1927g00008 - - vum:124828449 1061.6