Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1927g00007 ATGGAGAACAAAATGAGCGCAGTGTTTGTGATGGGGCTTGTCTTCATAAGCCTTATCTCAGTTACATCTGCTATTTCTGGAACTGCAACTTACTACACAGTTTACAAACCTTCTGCATGCTACGGGTACCAAGATCAGGGAACGATGATAGCTGCTGCAAGCGACGCAATATATGCGAACGGAGCTGCATGTGGTCAAATGTACAAGATCTCGTGCACAGGTGCCACCAACCAAGGTGTGCCTCAGCCATGCAAGGGTGGCAGTGTTACTGTGAAGATTGTTGATCGTTGTCCTTCCCCAGGTTGCCAAGCCACCATTGATCTCTCCCAAGAAGCTTTCTCTGCAATCGCTGACCTCAATGCTGGAAAAATTCAAATTGAATACAACAAGTAA 393 0.4631 MENKMSAVFVMGLVFISLISVTSAISGTATYYTVYKPSACYGYQDQGTMIAAASDAIYANGAACGQMYKISCTGATNQGVPQPCKGGSVTVKIVDRCPSPGCQATIDLSQEAFSAIADLNAGKIQIEYNK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1927g00007 130 Gene3D - 23 130 IPR036908 -
Vium1927g00007 130 CDD DPBB_EG45-like 25 129 - -
Vium1927g00007 130 SUPERFAMILY Barwin-like endoglucanases 14 129 IPR036908 -
Vium1927g00007 130 SMART dpbb_1 50 128 IPR007112 -
Vium1927g00007 130 Pfam Lytic transglycolase 51 128 IPR009009 -
Vium1927g00007 130 FunFam Barwin-related endoglucanase 24 130 - -
Vium1927g00007 130 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 4 130 IPR044206 GO:0009627|GO:0048046
Vium1927g00007 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 26 130 IPR007112 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1927g00007 48 130 Expansin Gene Family AT4G01630 35.417 3.54e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1927g00007 - - ahf:112743758 207.608