Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1927g00006 ATGACCCAATGCTTCACTTTCTTCTACCATAAATACTCTTTGCTGGAACAGTCATCTACACAAATTTATGTTAGCCCCTTCAAATTCTGCTACGCATTTCATCTCATAGGAGTGACAAATATGGTCTCTTTAAGGCCACGCCTTCTTTTCATTCTTCTCTGCATTGCAATGATTGAACATGCACATTCCAACAATGATAGGAAGACTTACATTGTCTACATGGGTGATCACCCTAAGGGCATGGACCTCACTTCCGTACCTTCTCTTCATACCACCATGGCTCAAAATGTCCTTGGCAGCGATTTCAAACCCGAAGCTGTAATGCACAGCTACAAGAACTTCAATGCGTTCGTCATGAAGTTAACAGAAGAGGAGGCTAAAAGAATGGCAGAAATGGAGAACGTTGTCTCTGTTTTCCCAAACGGCAAGAATCGTCTTCACACGACAAGGTCGTGGAACTTCTTAAGCTTTCCCCAGAATGTTAATAGAGAAACCTCAGAGAGTGACATAATTGTGGGAGTAATAGACAGTGGTATTTGGCCCGAGTCTGAGAGCTTCAGTGACAAAGGGTTTGGTCCTCCACCGGCCAAGTGGAAAGGATCATGTCATAACTTTACCTGCAACAACAAAATAATTGGCGCAAAGTACTTCAATCTGGAGAAAGAGTTTGCAAAAGATGATATAATATCTCCAAGAGACGCAGAAGGTCATGGATCACATTGTGCATCCACAGTTGCTGGAAACTCGGTTAACTCAGTGAGTGTATTTGGCTTAGCCTCAGGGACTGCCCGTGGAGGAGTTCCGTCTGCCCGAATCGCTGTGTACAAAGTATGTTGGAAGACAGGAAGTTGTGGCGAGGCTGACACCCTTTCAGCATTTGATGAAGCTATCAGTGATGGAGTAGACGTAATTTCTATTTCAACTGGACTCGGAGCAGTAGTCTACGTTCCGTATTTCAAAGATTCAAATAATATAGGAAGTTTTCATGCAATGAAAAAAGGGATATTAACCTCAAATTCTGCCAATAATTTGGGTCCAGGTCTTTCCTCAATGACAAACTATCCACCATGGTTACTTTCTGTTGCTGCAAGCGCTTTCGACAGAAAGATTGTCACCAAGGTGAAGCTGGGCAATGGCGCGGTATATGAGGGGGTTTCAATCAACACATTTGATCTTAAGGGAAAACCTTATCCACTTGTATATGGTGGAGATGTACCTGATATTGGTGGTGGACATAACAGCTCGACATCTAGGTTTTGCGTAAAGGACTCTTTGGATAAACATTCAGTAAAGGGAAAGATTGTTCTGTGTGAAAGCATTCAGAGTTCTGTTGATGTAGGGTTTTTGTCTGGGGCGGCCGGTGTTATATTTGGAAATAATTACCCTAAAGATTTGCCCGGAGCATATGCCTTGCCTGCTTTGGAGGTTACTCAGTGGGATCAAAGACTCATACATTCTTATTTAAATAAAAACAGAAATGCAACAGCCACAATATTTAAGAGTGAAGAAGTAAACGATGGACTAATCCCTTTCATATCTTCATTCTCCTCAAGAGGTCCGAATCCAATCACACCAAATACGCTAAAGCCTGACATTGCTGCTCCTGGAGTTGAAGTTATAGCTGCGTGGTCTCCAATTGACCCAATTTCAGATGTTAAAGGTGACAAAAGAAAAGTACTATATAATGTAATCTCAGGCACTTCCATGGCATGCCCTCATGCTACTGCAGCAGCTGCATATGTCAAATCATTTCATCCCAATTGGTCTCCTGCCATGATCAAGTCTGCACTGATGACCACTGCTATTCCAATGAGTCGCACTCTTAATCCTGAAGCTGAATTTGCATATGGAGCTGGGCTTATTAATCCTGCTAAGGCCGCAAATCCTGGTTTAGTGTATGATATTAGTGAAGCAGATTACGTAAAGTTCTTGTGTGGAGAAGGATACACAGATAAAGAGCTTCGAGTCCTAACTGAAGATCATAGTAGTTGCAAAGGACAAGAGAGCAAGAAAGCTGTATATGAATTAAACCTCCCATCATTTGCACTTTTTGTAAATAGTTCAGATTTTAGTAGTGCTTATCGAAGAACTGTTACAAATGTGGGATCCAAAACATCTACGTATAAAGCCAGAGTAATTGCTCCATCTTTGTTAAATATTCAAGTGAAACCCAGGACTCTTTCCTTCACATCTATAGGGCAGAAAAAGTCATTTTATGTGATAATTGAAGGGATAATCAATGTGGAAATACTCTCTGCTTCTTTGATTTGGGATGATGGAAATCATCAAGTTAGAAGCCCAATTGTAGTGTACGGGTCTGTAGACAGTTGA 2331 0.4148 MTQCFTFFYHKYSLLEQSSTQIYVSPFKFCYAFHLIGVTNMVSLRPRLLFILLCIAMIEHAHSNNDRKTYIVYMGDHPKGMDLTSVPSLHTTMAQNVLGSDFKPEAVMHSYKNFNAFVMKLTEEEAKRMAEMENVVSVFPNGKNRLHTTRSWNFLSFPQNVNRETSESDIIVGVIDSGIWPESESFSDKGFGPPPAKWKGSCHNFTCNNKIIGAKYFNLEKEFAKDDIISPRDAEGHGSHCASTVAGNSVNSVSVFGLASGTARGGVPSARIAVYKVCWKTGSCGEADTLSAFDEAISDGVDVISISTGLGAVVYVPYFKDSNNIGSFHAMKKGILTSNSANNLGPGLSSMTNYPPWLLSVAASAFDRKIVTKVKLGNGAVYEGVSINTFDLKGKPYPLVYGGDVPDIGGGHNSSTSRFCVKDSLDKHSVKGKIVLCESIQSSVDVGFLSGAAGVIFGNNYPKDLPGAYALPALEVTQWDQRLIHSYLNKNRNATATIFKSEEVNDGLIPFISSFSSRGPNPITPNTLKPDIAAPGVEVIAAWSPIDPISDVKGDKRKVLYNVISGTSMACPHATAAAAYVKSFHPNWSPAMIKSALMTTAIPMSRTLNPEAEFAYGAGLINPAKAANPGLVYDISEADYVKFLCGEGYTDKELRVLTEDHSSCKGQESKKAVYELNLPSFALFVNSSDFSSAYRRTVTNVGSKTSTYKARVIAPSLLNIQVKPRTLSFTSIGQKKSFYVIIEGIINVEILSASLIWDDGNHQVRSPIVVYGSVDS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1927g00006 776 ProSitePatterns Serine proteases, subtilase family, serine active site. 566 576 IPR023828 -
Vium1927g00006 776 Pfam Subtilase family 168 619 IPR000209 GO:0006508|GO:0008236
Vium1927g00006 776 CDD PA_subtilisin_like 374 498 - -
Vium1927g00006 776 Gene3D Peptidase S8/S53 domain 169 640 IPR036852 GO:0004252|GO:0006508
Vium1927g00006 776 CDD Peptidases_S8_3 146 602 IPR034197 -
Vium1927g00006 776 ProSitePatterns Serine proteases, subtilase family, histidine active site. 237 247 IPR022398 -
Vium1927g00006 776 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 54 147 IPR037045 -
Vium1927g00006 776 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 70 770 IPR045051 -
Vium1927g00006 776 Pfam Peptidase inhibitor I9 69 147 IPR010259 -
Vium1927g00006 776 Pfam Fibronectin type-III domain 675 770 IPR041469 -
Vium1927g00006 776 ProSiteProfiles Serine proteases, subtilase domain profile. 151 627 - -
Vium1927g00006 776 FunFam Subtilisin-like protease SBT1.5 169 378 - -
Vium1927g00006 776 SUPERFAMILY Subtilisin-like 146 631 IPR036852 GO:0004252|GO:0006508
Vium1927g00006 776 PRINTS Subtilisin serine protease family (S8) signature 167 186 IPR015500 -
Vium1927g00006 776 PRINTS Subtilisin serine protease family (S8) signature 565 581 IPR015500 -
Vium1927g00006 776 PRINTS Subtilisin serine protease family (S8) signature 233 246 IPR015500 -
Vium1927g00006 776 Gene3D - 367 505 - -
Vium1927g00006 776 Gene3D - 644 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1927g00006 Vium-Chr1927 111630 116197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1927g00006 66 771 Subtilisin-like Serine Gene Family AT5G59100 47.222 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1927g00006 - - gmx:100815516 1268.83