Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1927g00005 ATGGTGGTGGAGAGAACTCAACGGAGATCGAGCCATGGTGGTGATGTGATTTTGGAGTTGAAGCTGCGGCGGTCAATGCAGATTGCAGAAGGAGACACTAAGATACACGATCAGGACTTGAAGACGAGAGCCCGTTCGGCCCTTCCCAGCGCGTCCAGCCCTCAGCCAAGAGCTTGTGAGAAGACGTCCGTCACCAAGCGTCCGTCCGATCCGTTGCATGCGATATCATCCATCCGCCAGTCTTCATCCTTTTTCTTTGTTCCTCGTTCAAAACAAAAAGAAAAAATTAACTATCTGAAGGTACATTTATCCAGAGACTTTGAACCAAAAGCTATACTTCATAGTTACAAGAAGAGCTTTAATGGATTTGTTATCAAGTTAACGCAAGAGGAAGCGGGAAGAATGGCAGAAATGGACAGTGTTGTCTCTGTTTTCCCAAACAAGAAGAATCATCCGCACACAACTAGATCATGGGACTTCATAGGCTTTTCACAGCAAATCCTAAGAACAAATTTAGAGAGTGATATAATTGTCGGAGTAATAGACTCGGGAGTTTGGCCAGAGTCTAAGAGCTTCAGTGACGAAGGATTTGGTCCTCCACCAACTAGATGGAAGGGATCATGCCACAACTTTACCTGTAACAAAAAAATAATTGGAGCAAAGTATATCAATATTGAAGGTGTCTATGACAAAGACGATATCATATCTCCTAGAGATGCACAAGGCCACGGGTCACACACTGCATCCACAATTGCTGGAAATTTGGTTAAGTCTGCGAGTCTACTAGGTTTTGCCTCAGGGACAGCCCGTGGAGGAGTTCCATCAGCACGCATTGCCATATACAAAGCATGTTGGCTCAAAATAGGTTGTCCTGAGGCTGAAACCCTTGCAGCATTTGATGAAGCAATTGCTGATGGAGTTGATATAATCTCGATTTCGACCGGGTACAACAACACAGTAATCTTTCCCTATTTCCAAAGTGCGTATGATATAGGAAGTTTCCATGCAATGAAGAGAGGCATATTAACGTCAAATTCAGCCAATAATTTGGGTCCTCGATTTTCCTCTATGACCACTTACCCACCCTGGATACTCTCTGTGGCTGCTACCACTATTGACAGAAAGTTCCTCACCAAAGTGCAATTGGACAACGGCGTAGTTCTTGAGGGGGTTACAATTAACACTTTTGATCTAAAAAAGAAAATGTTTCCACTGATATACGCTGGAGATGTACCCAACACTGCGGACGGATATAATAGTTCCATATCCAGGTTTTGCTACGACAACTCTGTGGATAAACATTTAGTAAAGGGAAAGATCGTTCTGTGTGACAGAATTGGGTCTCCTAGCGATGTTGGGGTTTTGTCTGGGGCCGCTGGGATGCTTGTTGGAGCTACTGATGCAAAAGATGCGCCGACAACATATGCACTACCCGCAGCTTTCATTAGTCTAAGGAAATTTAACCTCGTACATTCTTACATGATTTCATCGAGAAATTCAACTGCTACAATATTCAGGAGTGACGAAGACAATGATTCACAAACCCCTTTCATAGTTTCGTTTTCATCAAGAGGTCCAAATCCAATTACCCCAAACACTCTCAAGCCTGATCTTGCTGCACCGGGAGTTAACATTCTAGCTGCATGGTCTCCAGTGTATCCAATTTCAACATCTAGAGGTGACAAAAGAGCAGTGCAATACAACATAGACTCTGGCACTTCAATGGCTTGCCCTCATGCAGCTGCAGCGGCTGCATATGTCAAATCATTTCACCCCAATTGGTCCCCTGCTATGATCAAGTCTGCATTAATGACCACAGCTACACCAATGAGTCCTACTCTTAATCCTGAAGCTGAATTCGCGTATGGGGCAGGGCAAGTTAATCCTGTTAAAGCAGCAAATCCTGGTTTAGTGTACGATATTAATGAAGTAGATTATGTGAAGTTCTTGTGTGGGGAGGGTTATACAGATAAAATGCTTCGGATACTCACTAAAGATCATAGTAGATGTAGTAAACATGCAAAGGAAGAAGCTGTGTATGACCTCAATCTTCCATCATTTGCTCTGTACGTAAATGTCTCATCTTTCGGTCGTGTTTATCATAGAACGGTTACAAATGTGGGATCAGAAAGGTCTCGTTATAAAGCCAAAGTGGTATCACCATCTTTGCTGGATATTCAGGTCAAACCAAATGTTCTATCCTTCACAGAAATTGGGCAGAAGAAGTCATTCTCAGTCATAATTGAAGGGAGTATTAATGCAGATATACTCTCTGCTTCTCTGGTTTGGGATGATGGCACTTTTCAAGTTAGAACACCGATTGTATATACTGATCGAAAAGTTATTCCATGGTCTGATGAATAA 2364 0.4285 MVVERTQRRSSHGGDVILELKLRRSMQIAEGDTKIHDQDLKTRARSALPSASSPQPRACEKTSVTKRPSDPLHAISSIRQSSSFFFVPRSKQKEKINYLKVHLSRDFEPKAILHSYKKSFNGFVIKLTQEEAGRMAEMDSVVSVFPNKKNHPHTTRSWDFIGFSQQILRTNLESDIIVGVIDSGVWPESKSFSDEGFGPPPTRWKGSCHNFTCNKKIIGAKYINIEGVYDKDDIISPRDAQGHGSHTASTIAGNLVKSASLLGFASGTARGGVPSARIAIYKACWLKIGCPEAETLAAFDEAIADGVDIISISTGYNNTVIFPYFQSAYDIGSFHAMKRGILTSNSANNLGPRFSSMTTYPPWILSVAATTIDRKFLTKVQLDNGVVLEGVTINTFDLKKKMFPLIYAGDVPNTADGYNSSISRFCYDNSVDKHLVKGKIVLCDRIGSPSDVGVLSGAAGMLVGATDAKDAPTTYALPAAFISLRKFNLVHSYMISSRNSTATIFRSDEDNDSQTPFIVSFSSRGPNPITPNTLKPDLAAPGVNILAAWSPVYPISTSRGDKRAVQYNIDSGTSMACPHAAAAAAYVKSFHPNWSPAMIKSALMTTATPMSPTLNPEAEFAYGAGQVNPVKAANPGLVYDINEVDYVKFLCGEGYTDKMLRILTKDHSRCSKHAKEEAVYDLNLPSFALYVNVSSFGRVYHRTVTNVGSERSRYKAKVVSPSLLDIQVKPNVLSFTEIGQKKSFSVIIEGSINADILSASLVWDDGTFQVRTPIVYTDRKVIPWSDE 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1927g00005 787 Pfam Peptidase inhibitor I9 102 149 IPR010259 -
Vium1927g00005 787 PRINTS Subtilisin serine protease family (S8) signature 571 587 IPR015500 -
Vium1927g00005 787 PRINTS Subtilisin serine protease family (S8) signature 173 192 IPR015500 -
Vium1927g00005 787 PRINTS Subtilisin serine protease family (S8) signature 239 252 IPR015500 -
Vium1927g00005 787 CDD Peptidases_S8_3 151 608 IPR034197 -
Vium1927g00005 787 ProSiteProfiles Serine proteases, subtilase domain profile. 157 633 - -
Vium1927g00005 787 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 104 775 IPR045051 -
Vium1927g00005 787 Pfam Subtilase family 174 625 IPR000209 GO:0006508|GO:0008236
Vium1927g00005 787 ProSitePatterns Serine proteases, subtilase family, serine active site. 572 582 IPR023828 -
Vium1927g00005 787 Pfam Fibronectin type-III domain 681 775 IPR041469 -
Vium1927g00005 787 Gene3D - 650 779 - -
Vium1927g00005 787 Gene3D - 373 511 - -
Vium1927g00005 787 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 66 153 IPR037045 -
Vium1927g00005 787 Gene3D Peptidase S8/S53 domain 175 646 IPR036852 GO:0004252|GO:0006508
Vium1927g00005 787 CDD PA_subtilisin_like 380 504 - -
Vium1927g00005 787 SUPERFAMILY Subtilisin-like 152 637 IPR036852 GO:0004252|GO:0006508
Vium1927g00005 787 MobiDBLite consensus disorder prediction 31 69 - -
Vium1927g00005 787 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1927g00005 Vium-Chr1927 92761 101213 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1927g00005 112 750 Subtilisin-like Serine Gene Family AT5G59190 48.148 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1927g00005 - - gmx:100787973 1147.11