LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1927g00003	ATGGCACAAAAATTCTTTGTTCCTCGTTCAAAACAAAAAGAAAAAATTAACTATCTGAAGGTACATTTATCCAGAGACTTTGAACCAAAAGCTATACTTCATAGTTACAAGAAGAGCTTTAATGGATTTGTTATCAAGTTAACGCAAGAGGAAGCGGGAAGAATGGCAGAAATGGACAGTGTTGTCTCTGTTTTCCCAAACAAGAAGAATCATCCGCACACAACTAGATCATGGGACTTCATAGGCTTTTCACAGCAAATCCTAAGAACAAATTTAGAGAGTGATATAATTGTCGGAGTAATAGACTCGGGAGTTTGGCCAGAGTCTAAGAGCTTCAGTGACGAAGGATTTGGTCCTCCACCAACTAGATGGAAGGGATCATGCCACAACTTTACCTGTAACAAAAAAATAATTGGAGCAAAGTATATCAATATTGAAGGTGTCTATGACAAAGACGATATCATATCTCCTAGAGATGCACAAGGCCACGGGTCACACACTGCATCCACAATTGCTGGAAATTTGGTTAAGTCTGCGAGTCTACTAGGTTTTGCCTCAGGGACAGCCCGTGGAGGAGTTCCATCAGCACGCATTGCCATATACAAAGCATGTTGGCTCAAAATAGGTTGTCCTGAGGCTGAAACCCTTGCAGCATTTGATGAAGCAATTGCTGATGGAGTTGATATAATCTCGATTTCGACCGGGTACAACAACACAGTAATCTTTCCCTATTTCCAAAGTGCGTATGATATAGGAAGTTTCCATGCAATGAAGAGAGGCATATTAACGTCAAATTCAGCCAATAATTTGGGTCCTCGATTTTCCTCTATGACCACTTACCCACCCTGGATACTCTCTGTGGCTGCTACCACTATTGACAGAAAGTTCCTCACCAAAGTGCAATTGGACAACGGCGTAGTTCTTGAGGGGGTTACAATTAACACTTTTGATCTAAAAAAGAAAATGTTTCCACTGATATACGCTGGAGATGTACCCAACACTGCGGACGGATATAATAGTTCCATATCCAGGTTTTGCTACGACAACTCTGTGGATAAACATTTAGTAAAGGGAAAGATCGTTCTGTGTGACAGAATTGGGTCTCCTAGCGATGTTGGGGTTTTGTCTGGGGCCGCTGGGATGCTTGTTGGAGCTACTGATGCAAAAGATGCGCCGACAACATATGCACTACCCGCAGCTTTCATTAGTCTAAGGAAATTTAACCTCGTACATTCTTACATGATTTCATCGAGAAATTCAACTGCTACAATATTCAGGAGTGACGAAGACAATGATTCACAAACCCCTTTCATAGTTTCGTTTTCATCAAGAGGTCCAAATCCAATTACCCCAAACACTCTCAAGCCTGATCTTGCTGCACCGGGAGTTAACATTCTAGCTGCATGGTCTCCAGTGTATCCAATTTCAACATCTAGAGGTGACAAAAGAGCAGTGCAATACAACATAGACTCTGGCACTTCAATGGCTTGCCCTCATGCAGCTGCAGCGGCTGCATATGTCAAATCATTTCACCCCAATTGGTCCCCTGCTATGATCAAGTCTGCATTAATGACCACAGCTACACCAATGAGTCCTACTCTTAATCCTGAAGCTGAATTCGCGTATGGGGCAGGGCAAGTTAATCCTGTTAAAGCAGCAAATCCTGGTTTAGTGTACGATATTAATGAAGTAGATTATGTGAAGTTCTTGTGTGGGGAGGGTTATACAGATAAAATGCTTCGGATACTCACTAAAGATCATAGTAGATGTAGTAAACATGCAAAGGAAGAAGCTGTGTATGACCTCAATCTTCCATCATTTGCTCTGTACGTAAATGTCTCATCTTTCGGTCGTGTTTATCATAGAACGGTTACAAATGTGGGATCAGAAAGGTCTCGTTATAAAGCCAAAGTGGTATCACCATCTTTGCTGGATATTCAGGTCAAACCAAATGTTCTATCCTTCACAGAAATTGGGCAGAAGAAGTCATTCTCAGTCATAATTGAAGGGAGTATTAATGCAGATATACTCTCTGCTTCTCTGGTTTGGGATGATGGCACTTTTCAAGTTAGAACACCGATTGTATATACTGATCGAAAAGTTATTCCATGGTCTGATGAATAA	2124	0.4138	MAQKFFVPRSKQKEKINYLKVHLSRDFEPKAILHSYKKSFNGFVIKLTQEEAGRMAEMDSVVSVFPNKKNHPHTTRSWDFIGFSQQILRTNLESDIIVGVIDSGVWPESKSFSDEGFGPPPTRWKGSCHNFTCNKKIIGAKYINIEGVYDKDDIISPRDAQGHGSHTASTIAGNLVKSASLLGFASGTARGGVPSARIAIYKACWLKIGCPEAETLAAFDEAIADGVDIISISTGYNNTVIFPYFQSAYDIGSFHAMKRGILTSNSANNLGPRFSSMTTYPPWILSVAATTIDRKFLTKVQLDNGVVLEGVTINTFDLKKKMFPLIYAGDVPNTADGYNSSISRFCYDNSVDKHLVKGKIVLCDRIGSPSDVGVLSGAAGMLVGATDAKDAPTTYALPAAFISLRKFNLVHSYMISSRNSTATIFRSDEDNDSQTPFIVSFSSRGPNPITPNTLKPDLAAPGVNILAAWSPVYPISTSRGDKRAVQYNIDSGTSMACPHAAAAAAYVKSFHPNWSPAMIKSALMTTATPMSPTLNPEAEFAYGAGQVNPVKAANPGLVYDINEVDYVKFLCGEGYTDKMLRILTKDHSRCSKHAKEEAVYDLNLPSFALYVNVSSFGRVYHRTVTNVGSERSRYKAKVVSPSLLDIQVKPNVLSFTEIGQKKSFSVIIEGSINADILSASLVWDDGTFQVRTPIVYTDRKVIPWSDE	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1927g00003	707	PRINTS	Subtilisin serine protease family (S8) signature	93	112	IPR015500	-
	Vium1927g00003	707	PRINTS	Subtilisin serine protease family (S8) signature	159	172	IPR015500	-
	Vium1927g00003	707	PRINTS	Subtilisin serine protease family (S8) signature	491	507	IPR015500	-
	Vium1927g00003	707	SUPERFAMILY	Subtilisin-like	72	557	IPR036852	GO:0004252\|GO:0006508
	Vium1927g00003	707	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	3	73	IPR037045	-
	Vium1927g00003	707	ProSiteProfiles	Serine proteases, subtilase domain profile.	77	553	-	-
	Vium1927g00003	707	Gene3D	-	293	431	-	-
	Vium1927g00003	707	ProSitePatterns	Serine proteases, subtilase family, serine active site.	492	502	IPR023828	-
	Vium1927g00003	707	Pfam	Peptidase inhibitor I9	24	69	IPR010259	-
	Vium1927g00003	707	CDD	Peptidases_S8_3	71	528	IPR034197	-
	Vium1927g00003	707	Gene3D	Peptidase S8/S53 domain	95	566	IPR036852	GO:0004252\|GO:0006508
	Vium1927g00003	707	Gene3D	-	570	699	-	-
	Vium1927g00003	707	Pfam	Fibronectin type-III domain	601	695	IPR041469	-
	Vium1927g00003	707	Pfam	Subtilase family	94	545	IPR000209	GO:0006508\|GO:0008236
	Vium1927g00003	707	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	28	695	IPR045051	-
	Vium1927g00003	707	CDD	PA_subtilisin_like	300	424	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1927g00003	Vium-Chr1927	85364	88668	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1927g00003	32	670	Subtilisin-like Serine Gene Family	AT5G59190	48.148	0.0	590

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1927g00003	-		-	gmx:100787973	1147.11