Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1925g00003 ATGCTGGGGACCCCGGAGGAAACCTCCGCCCTCATCGACACCTACCGTGACAAGTGGTACTCCCTCGGCCGCACAAACCTCAAAGCCATCCACTGGCAAGAGGTCGCCGATGCCATCACTGCCCAGTGCCCCAACGCTTCTGCCACTGCCAAAACCGCCGTCCAGTGCCGCCACAAAATGGAAAAATTCCGCAAACGCTACCGCACCGAAATCCAATGCCTCCGCTCCCTCCCTCTCCCTAGCCTCATCAACAACTCCACCACCGCTTCTCCCTCCTCCTGGGTTCACTTCAAATCCATGGATTCCATGGAAAAAGGCCCCAACAAACCCCACACCGACACCACCGCCGCCACCAACCCCAACAACCTCAATTTCCCCGACGACGACCCTGTTGAGAGGTTCACTGCTGTTGGGACTCAAAGAGGAACTGGAATTGGTGGAGGGATGATGAAAGAGAGCAAACCCTCAACCAACTTTTGA 480 0.5667 MLGTPEETSALIDTYRDKWYSLGRTNLKAIHWQEVADAITAQCPNASATAKTAVQCRHKMEKFRKRYRTEIQCLRSLPLPSLINNSTTASPSSWVHFKSMDSMEKGPNKPHTDTTAATNPNNLNFPDDDPVERFTAVGTQRGTGIGGGMMKESKPSTNF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1925g00003 159 MobiDBLite consensus disorder prediction 109 125 - -
Vium1925g00003 159 Pfam Myb/SANT-like DNA-binding domain 4 103 IPR044822 -
Vium1925g00003 159 Gene3D - 4 69 - -
Vium1925g00003 159 MobiDBLite consensus disorder prediction 140 159 - -
Vium1925g00003 159 MobiDBLite consensus disorder prediction 100 128 - -
Vium1925g00003 159 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 5 124 IPR044823 -
Vium1925g00003 159 FunFam Trihelix transcription factor ASIL2 4 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1925g00003 Vium-Chr1925 66420 66899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1925g00003 8 120 Trihelix Transcription Factor Family AT3G14180 26.549 7.23e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium1925g00003 Myb_DNA-bind_4 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1925g00003 - - vum:124828434 312.383