Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1922g00024 ATGGCAGGGAACTTCAGATTCACAATGGATCAAAAGGACATTGTTAGATTATTGACTACAACTATAGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAGCAAAGAGCCCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGAAGGAAGTTGTGTTAAGGACAGTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACATATAACATGGAAACTAAGCTTGCTAGGCTAGATTATGCAGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACATCTAAATCTATCCTATTTATGGAAGTTGAGGAACAGCATTCAAAATTGTATTCTCCATGCTCTCGAGATGTTCATTGTTGACCCCTTTTTTTCACGGATTGATTTTGCTCCTGAACTCTGGACGAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGTTGGTATTCTGAGGAGAGGCATAGGCTTATGATGGAAGTGATACCAGACTCAAGTGATTTGTCCTTTACAGCTGATTTTGATCGGTTTTTTAACGAGTCTTTGGTATTTTCTATGAGGCCACATCAGTTAGACAAATTGCAAAAGCTGGAGCAGCTTTATGCAGAATCATTGGATGAAAACACACGGCTATACGCAAAATATTATAAAGATTGCATGAATTCTGATTCCACTTCAGGCAAGAAGGCAGCTCCTATGTTGCCTATTGCTGAGCCACCAAGGACTCCTTTGCATGAGTTGAGTCGGTCTGTTCCTGATTTTGTAAAATTTGGCCCTATCTTGCCCAAGAGTGCGGGCTTCTCTTTGACAACAAGATCAAAAGATGGTGTAAATGAAACAATCAGCACAGAGAATTCAACTTCCAGCCAATCAAAGGTTGAGAAATCATCCATATGGGCTGCTAAGGAAAGTATCATTGAGGAGAATGAGAATGAAGATGATTCAGATTCTGAGCTTGATGATGGTTCAGTGGATTCAGATAGAAGAAACAATATTTTATCACCAGGAATGAAGATGGCCAAGGATGAGGATATTGAACTAAAGGCGCCTCTATCAAACCATAAGAATAAGATTCATTCTCCTGATATCTTCTCTCCCTTGGATTCCCCAAAAGCAGGTTCAAATAATTCGTCAACAATTCCTGATACAAACAATAAGAGAGAACCCAAGTATCTTCGGTTACTGTCTACTCGTTTGAGGGACTCAACTATTTCTGACTCTTTATCATCATCATCTCTAGAAATGAGCACGGATCATATGTTGAACTCTGACACAGAAATAAGGGGCTTGAAGAATACGAAGAGGAAAAACAATAACCAAACACCAAGTATGAATCATGACAGTGGGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAAGTGACGAGGAAAATCAAAGCTTAACTATGTTGCCTAAGTTAGAGAAGCTGACAATTGGACCAAAACCACCAAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTGACCCTTGAAACAGGCCAGACTTATGAAAGAAAAGCAATTCAAGAATGGCTCAGAACAGGTAACACGACATGCCCCATCACGCGACAGCCTCTGTCTGCAAATATATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACGTCATGGAAAGAACAGAATCCAGAGCTGGCGCATGAACTCTCGAATTCTAACACTCCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGACTTTCAAATGCTCTCCATTACACATAGAGCAACTGATTCACCAGGTCTGAAGAGCAAAGAAAATTATACTAGACAAAGGAGCAACAGATTTATGCGAGTTTCTGTTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGTAGTTGAAACAATTTTGAATTCCTTGAAACCTTACGTTTCAAGTCTTTCTACGTCAGAAAACTTGCAAGAATGTGAAGAAGCAGTGATGGAAATAGCAAGATTATGGAAAGATTCAAAGACAGATCCTCAGATTCATGGTTATTTATCAAAGCCAGAAATCATAAGTGGTTTGGTTGAAATTCTTTCAGCTTCTATGAGTAGAGTAGTTTTGAGAACATCAATTTATATACTCTCTGAGTTGATATTTTTAGATGAAAGTGTTGGAGAAACACTTAACAGTGTTGATTCTGATTTCGATTGCTTGGCTGCTCTGCTTAAGAACGGTTTAGCTGAGGCTGTTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTTGGCACATGAGCTTGTACCATCTCTTGTGCAAGTTATTCAGAACGAAAATGAGGCTTCAGATGATTTTCAGTTAGTAATAGACCCCAAAGATGCTGCCATAGCAATTCTTGAGCAGATTTTAATAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTGAAAATGGAATTCCATCCTTAGCAAAGTATCTAGAGAGGATGGAGGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAGGGTTGCAAGAGTTTGATAGCCAACAGAATTGAATTGTCTCCTGTGCTTGAATTATTTCACGCTGGAAATGATAGTGTGCGAGGCATCTGCGTGGAGTTTCTCTCCGAACTGGTTCAATTGAATAGAAGGACAGTCTGCAACCAGATATTACAAGCAATCAAGGATGAAGGAGCATTTAGTACGATGCATACGTTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCTAGCCTCCTTCTTCAGATTGATCTTCTGGTTGAGCCACTGAAAATGAGCATTTATAGGGAAGAAGCGATAGAGATACTTATAGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTCTAGATGCTTTACTGTTTCTTATTGGACAAGTAACCACCACTGGAATGTCATACACTGAAGCTTGGTTACTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTACTTAAGGCTGGGCAGTTGGGACAGTATGACAATGATTCAATGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAACTTTTGTGCTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCTTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTGGCATGGCTCACACACATGCTCTCTACTCTTCCTGATACCGGCATAAAGGATGTTGCTCGCAAATCTTTGCTTGATGAACTTATAAATATCCTGCAATCATCTAAGAACCTAGAGGAGATGATATTGGCTAGCCTAGCCTTGAAAACTTTCCTTAGTGATCCAATTACTCAAGAAGCACTTAGAGCTTATGCTAAGAGAATCTATAGAACCATGAGGAAGCTGAAGAAATATTCAACAGTAGCAGTTGATATTATGAAGGCCTTACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAGGAAGTTGTTGAGTTAGATTTGAGTTCAAATGGAGAGGTCCTTTCTTTGCATTACATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAGAGAATACCAAGAGTGATTCAAGAAACCCGTGAGCACACAAAAGCTGTAACATCGCTATGTTCTTCAGATGATAGACTATTCAGCGGTTCCTTAGACAAAACCATTCGGGTTTGGACAATCAAACCAGATGAGATTAAATGTATAGATGTTCATGATGTAAAGGAACCGGTGTATGAGCTGACAGCCAATGCCAAATTGGCATGCTATGTATCTCAAGGAAGTGGAGTTAAGGTTTTCAAGTGGTCAGAGGCTCCAAAGCTCATGAATTTCAACAAATATGTGAAATGCCTAGCTGTTGCTGGGGATAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTATCCAAGAATACATCAAACTCATTCTTCTCTGGGACAAGAAAGTTGTTGGGAAAACAAACCATATACTCCCTTCGAGTTCATGATGATCTCCTCTTTGCTTGTGGTTCTTCAGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGGTCACTCTCAACTGGACTTGACATCCATCGCATAGCCATTAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTGAAAGATAAGCTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCTTTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCTTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4473 0.4 MAGNFRFTMDQKDIVRLLTTTIDSFIQDRLINKEQRAQHKEQCAERLAAEEGSCVKDSEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNSIQNCILHALEMFIVDPFFSRIDFAPELWTNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDRFFNESLVFSMRPHQLDKLQKLEQLYAESLDENTRLYAKYYKDCMNSDSTSGKKAAPMLPIAEPPRTPLHELSRSVPDFVKFGPILPKSAGFSLTTRSKDGVNETISTENSTSSQSKVEKSSIWAAKESIIEENENEDDSDSELDDGSVDSDRRNNILSPGMKMAKDEDIELKAPLSNHKNKIHSPDIFSPLDSPKAGSNNSSTIPDTNNKREPKYLRLLSTRLRDSTISDSLSSSSLEMSTDHMLNSDTEIRGLKNTKRKNNNQTPSMNHDSGNSLGLNDSSLCESDEENQSLTMLPKLEKLTIGPKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPELAHELSNSNTPRGSSCSPSAKDFQMLSITHRATDSPGLKSKENYTRQRSNRFMRVSVATSPTSVLSQAVVETILNSLKPYVSSLSTSENLQECEEAVMEIARLWKDSKTDPQIHGYLSKPEIISGLVEILSASMSRVVLRTSIYILSELIFLDESVGETLNSVDSDFDCLAALLKNGLAEAVLLIYQLRPVFAQLLAHELVPSLVQVIQNENEASDDFQLVIDPKDAAIAILEQILIGGDEYSRSLNALSVISENGIPSLAKYLERMEGRRSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNQILQAIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPLKMSIYREEAIEILIEALWQKDFSNTQMKALDALLFLIGQVTTTGMSYTEAWLLKIAGFDQPYNALLKAGQLGQYDNDSMETMEDEKNAMNSWQKRVTFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVAWLTHMLSTLPDTGIKDVARKSLLDELINILQSSKNLEEMILASLALKTFLSDPITQEALRAYAKRIYRTMRKLKKYSTVAVDIMKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYMNGQVLSGHSDGTIKVWDARKRIPRVIQETREHTKAVTSLCSSDDRLFSGSLDKTIRVWTIKPDEIKCIDVHDVKEPVYELTANAKLACYVSQGSGVKVFKWSEAPKLMNFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKNTSNSFFSGTRKLLGKQTIYSLRVHDDLLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1922g00024 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1249 1281 IPR001680 GO:0005515
Vium1922g00024 1490 Gene3D - 640 1014 IPR011989 -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 337 418 - -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 434 454 - -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 434 490 - -
Vium1922g00024 1490 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Vium1922g00024 1490 PRINTS G protein beta WD-40 repeat signature 1475 1489 IPR020472 -
Vium1922g00024 1490 PRINTS G protein beta WD-40 repeat signature 1266 1280 IPR020472 -
Vium1922g00024 1490 PRINTS G protein beta WD-40 repeat signature 1224 1238 IPR020472 -
Vium1922g00024 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1224 1237 IPR001680 GO:0005515
Vium1922g00024 1490 Gene3D - 1187 1490 IPR015943 GO:0005515
Vium1922g00024 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1249 1281 - -
Vium1922g00024 1490 SMART WD40_4 1447 1488 IPR001680 GO:0005515
Vium1922g00024 1490 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Vium1922g00024 1490 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Vium1922g00024 1490 SUPERFAMILY ARM repeat 665 1004 IPR016024 -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 370 386 - -
Vium1922g00024 1490 CDD RING-Ubox_PUB 516 568 IPR045210 -
Vium1922g00024 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 597 IPR013083 -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 465 490 - -
Vium1922g00024 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1456 1490 - -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 400 416 - -
Vium1922g00024 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1489 - -
Vium1922g00024 1490 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Vium1922g00024 1490 SUPERFAMILY RING/U-box 514 587 - -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 254 276 - -
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 309 328 - -
Vium1922g00024 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1456 1490 IPR001680 GO:0005515
Vium1922g00024 1490 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Vium1922g00024 1490 Pfam WD domain, G-beta repeat 1458 1487 IPR001680 GO:0005515
Vium1922g00024 1490 Pfam WD domain, G-beta repeat 1219 1237 IPR001680 GO:0005515
Vium1922g00024 1490 Pfam WD domain, G-beta repeat 1248 1278 IPR001680 GO:0005515
Vium1922g00024 1490 MobiDBLite consensus disorder prediction 338 352 - -
Vium1922g00024 1490 SUPERFAMILY WD40 repeat-like 1217 1489 IPR036322 GO:0005515
Vium1922g00024 1490 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1922g00024 Vium-Chr1922 126177 134085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1922g00024 515 586 U-box Gene Family AT2G28830 47.222 1.80e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1922g00024 - - gmx:100776142 2571.58