Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1922g00019 ATGAGTTCATCCAACCAGTTCAACCAGGGCAGCAGATTTTTAGCAAGTAAGCAAAGGAATGAGGTTGATGCTAAAGAAGAAATCTTCAAAATTGATGGAGCACGTATAAAACCAACGGAAGTTAAGAATTCAGCAGGAAACACAACATTTGCGACAAACTATGGACGTTGGTTGGAAAAACACAAGAAACTTATTTGTGAGATACGGAGTGCTTTAAAAGATGAAGTTGTTGATGACAAACTAGTGTTTCTTATAGACATTGCCATGAAGCACTATTTGGAATTCTCAGAAATGGAAACAAGTGCTGCAAATTTCGATGTCAGCAATGTTGCCTGGTGCACAACAGCTGACCAAAGTCTGTGGTGGATCGGAGGATTTCGCCCTTCTCAACTGCTCCAGGTTATTGTGCCTCAACTTCAACGTTCGTGTTCTCAGCAGCAACTTTCTGATATTTGCAATTTTGTACAATCATGTGAACAAGTAGAATATGCTCTTGCACGAGGCATGGAGAAACTTCACCAAATCCTTCATAATGCAACAACAGAAGGTGAGAGAGGATTAAAACTGACGTGTGCCCTACAACAAATGAGATTTCTAAAGCAGGCAAATGATGTTCGACAGGAATTTTTGCATCGACTGCGTGGTCTGCTCACAAATAGTCAGTATGCAGAATTCTTACTTGGTTTGTGGCAACGCCTCTATAATCCTTCCAGCTCACTTTGA 723 0.408 MSSSNQFNQGSRFLASKQRNEVDAKEEIFKIDGARIKPTEVKNSAGNTTFATNYGRWLEKHKKLICEIRSALKDEVVDDKLVFLIDIAMKHYLEFSEMETSAANFDVSNVAWCTTADQSLWWIGGFRPSQLLQVIVPQLQRSCSQQQLSDICNFVQSCEQVEYALARGMEKLHQILHNATTEGERGLKLTCALQQMRFLKQANDVRQEFLHRLRGLLTNSQYAEFLLGLWQRLYNPSSSL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1922g00019 240 PANTHER TRANSCRIPTION FACTOR TGA9 43 228 - -
Vium1922g00019 240 ProSiteProfiles DOG1 domain profile. 47 240 IPR025422 GO:0006351|GO:0043565
Vium1922g00019 240 Pfam Seed dormancy control 65 136 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1922g00019 Vium-Chr1922 110478 111715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1922g00019 44 239 Calmodulin-binding Proteins AT5G10030 40.284 4.03e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1922g00019 K14431 - var:108342635 455.292