Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1922g00012 ATGATGCATCTTCAAACCCCCTTTTTTCTCTCATTCTCAGCATTGTTTATAGGCTTCTTCTGTCACTGTTCTGCAACAAAATTCACAGTGGGGGATTCAGCAGGCTGGATTATTCCACCATATCCAACATACTACAATAATTGGACACATTCCCATTTCATAACAGTAGGCGATTCTATTGAATTCCAGTTCGATGACAAATTCTACAACCTAATTCAGGTATCACAACAAGAGTACGAGCATTGCACATCACTTGAGCCTCTAAGGATATTCAATAGTAGCCCAGTAATTCTTCCACTGAAGGAGAAAGGTGTGTTGTTCTTCACATGCAGCATCTCAAACTACTGTTGTCTAGGCCAGAAGATTGCAATTTCTGTTCATGAAAGTTCTTCACAAAAACCTCCATCACCATCACCTTCACCCTCTCAAGTGCCAATCATAATCTCTCCTCCACAACTGTCACCAAATGGGTCTGCTCCTCAACCTCATGGATCTAGTGGCATGATTAGCCCTCCACCTTCTACTGGAAACACTTCAGGAGGCAATGCTGGGAACCCACCTGTGCCATCTTCCACTCAAGATGATGCGAATAATGCAGTGGCCTTGGCAGGTGGGAGAAGTTTCACTCTGTCTCTGGGGCAAGTCTTGTCTATTCTTGGTGCTTTCTTTGGCTTTTGGGTGATGTAG 687 0.4381 MMHLQTPFFLSFSALFIGFFCHCSATKFTVGDSAGWIIPPYPTYYNNWTHSHFITVGDSIEFQFDDKFYNLIQVSQQEYEHCTSLEPLRIFNSSPVILPLKEKGVLFFTCSISNYCCLGQKIAISVHESSSQKPPSPSPSPSQVPIIISPPQLSPNGSAPQPHGSSGMISPPPSTGNTSGGNAGNPPVPSSTQDDANNAVALAGGRSFTLSLGQVLSILGAFFGFWVM 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1922g00012 228 MobiDBLite consensus disorder prediction 134 148 - -
Vium1922g00012 228 PANTHER BLUE COPPER PROTEIN 25 136 IPR039391 GO:0009055
Vium1922g00012 228 FunFam Cupredoxin superfamily protein 25 132 - -
Vium1922g00012 228 MobiDBLite consensus disorder prediction 129 196 - -
Vium1922g00012 228 SUPERFAMILY Cupredoxins 25 127 IPR008972 -
Vium1922g00012 228 ProSiteProfiles Phytocyanin domain profile. 26 128 IPR003245 GO:0009055
Vium1922g00012 228 MobiDBLite consensus disorder prediction 149 196 - -
Vium1922g00012 228 Pfam Plastocyanin-like domain 43 120 IPR003245 GO:0009055
Vium1922g00012 228 Gene3D - 25 137 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1922g00012 Vium-Chr1922 83904 84778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1922g00012 4 184 Phytocyanin Superfamily AT4G28365 31.351 7.57e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1922g00012 - - var:108341448 421.394