Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1922g00011 ATGAATAGTTCAGAGGAGTCTGTGTTATTGCTAGTGAGTTTTATTATTCTGACTCTTATCGTCACACTTGCTGCTTACTTGTGCTCTACTGATATTCCACGTACCACTCCTTCTGTTCCTGCAGCTGTGACACACTCCAACCACACCACAATCACTGTGGAGACACCTGAGCCATGCATAGATCAGAGTGTCTGCAACTTTCCAAGTCTCCAATTTTCCAAAACCAAATTGTGTGGTAGCACTAGCAGTAGCTCTTCAAGCTGTTCCATATGCTTGATGGATTACAAAGACCGTGATTCCTTGAGAGTGTTGCCTGCCTGTGGTCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATATGACCTGTCCAGTTTGTAGGACCCCAATAACCCTCTCAGATGTAACCAAAACTTTTTAG 429 0.4359 MNSSEESVLLLVSFIILTLIVTLAAYLCSTDIPRTTPSVPAAVTHSNHTTITVETPEPCIDQSVCNFPSLQFSKTKLCGSTSSSSSSCSICLMDYKDRDSLRVLPACGHFFHVKCVDPWLRINMTCPVCRTPITLSDVTKTF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1922g00011 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 138 IPR013083 -
Vium1922g00011 142 SUPERFAMILY RING/U-box 81 136 - -
Vium1922g00011 142 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Vium1922g00011 142 SMART ring_2 88 129 IPR001841 -
Vium1922g00011 142 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 134 IPR045899 -
Vium1922g00011 142 Pfam Ring finger domain 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1922g00011 Vium-Chr1922 82891 83319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1922g00011 61 131 C3H Transcription Factor Family AT5G06490 51.351 2.14e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1922g00011 - - vra:106770594 258.455