Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1922g00010 ATGAACAACGGCACAACCACCAAGGGCTATGGTTTTAACTCAGATGGGTTCAGATATGGAGTAGCTTTTGTAATTGGGTCGCTGGTATTACTTCTCACGGTGGCTTTTGCATGTGTGCGCCTTCGCATGGCTCGAGGTCCCAACATGCTCAATATTTTGGCTGGAATTCCACCATCTCATCCCACAAGAGATGCAGACTCAGCTGAACAAGGCCTTGGCCTTAGACTTGATCACATTGACACAAGCTTTGAAAGCTATCCGAAACTTGTATACTCCCAAGCAGAGAAGGGTTCAACTTCAACCAACATCCCTTCTTCTAGCTGTTCCATCTGCTTAGGTGACTACAAAGAGGGTGACATGTTGAGGTTACTTCCTCACTGTCACCATATTTTCCACCTTGCTTGCGTTGATCCATGGCTTAGGTTCCATTCAACTTGTCCCATTTGTAGAAAATCATCTCTTCAACCTTCACATAATCCTCCCTCCATTTGA 492 0.4533 MNNGTTTKGYGFNSDGFRYGVAFVIGSLVLLLTVAFACVRLRMARGPNMLNILAGIPPSHPTRDADSAEQGLGLRLDHIDTSFESYPKLVYSQAEKGSTSTNIPSSSCSICLGDYKEGDMLRLLPHCHHIFHLACVDPWLRFHSTCPICRKSSLQPSHNPPSI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1922g00010 163 Coils Coil 163 163 - -
Vium1922g00010 163 SMART ring_2 108 149 IPR001841 -
Vium1922g00010 163 Pfam Ring finger domain 107 150 IPR001841 -
Vium1922g00010 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 155 IPR045899 -
Vium1922g00010 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 154 IPR013083 -
Vium1922g00010 163 CDD RING-H2_EL5-like 107 150 - -
Vium1922g00010 163 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Vium1922g00010 163 SUPERFAMILY RING/U-box 107 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1922g00010 Vium-Chr1922 81220 82011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1922g00010 16 154 C3H Transcription Factor Family AT2G35910 37.762 4.83e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1922g00010 - - gmx:102663718 219.55