Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1922g00006 ATGAAGATGGGAATTGCAGTGGCAGGTGTTGATGTGTTGAGTGAAAAAGCGGCGATGATGAGAGAGTCTCTGCAGAAGAGTCAAACCATCGCGGACAACGTCGTCACCATTCTAGGCTCCTTCGACCACCGTCTCTCGGCACTTGAAACTGCCATGCGTCCAACTCAGATTAGAACTCATTCCATTAGGAAGGCTCATGAGAATATTGATAGGACTTTGAAGGCTGCGGAGGTTATATTGGCTCACTTTGATCAATATCGTCAGGCTGAGGCAAAAATACTTAAAGGGCCACATGAAGACTTGGAAAACTATCTTCAAGCAATTGAAAACTTGAGAAGCAATATTCAGTTTTTTGGCAGTAAGAAGGGTTTTAAGAGCACTGATGGCATTGTTGTTCATGCTAATAATTTGTTAGCTAAGGCTATTTCAAAGCTAGAAGATGAGTTTAGGCAGTTATTATTATCTTACAGCAAACCTGTGGAACCTGAGCGTCTCTTTGACTGCCTTCCAAACTCAATGCGACCTTCATCAGGATCACCTCACCATGAGGGTGGTCCCAGTGGCAAGATACCTTCTAATCACCATTCTGAGTCTCACAACAATAATGCCGATGCTGTTGTATATACCCCTCCTGCTCTTATACCACCAAGATTTTTGCCACTGCTACACGATTTAGCTCAGCAAATGGTTGAAGCTGGTCACCAACAACAGTTACTCAAAATATACAGGGATGCCCGTTCTAATGTGTTGGAAGAGAGCCTTCAAAAACTTGGAGTTGAAAAACTCAACAAAGATGATGTTCAAAAGCTGCAATGGGAGATCTTGGAAGCTAAAATTGGAAACTGGATTCATTTCATGCGTATAGCAGTGAAATTGTTGTTTGCTGGTGAGAGGAAAGTTTGCGATCAGATATTTGAAGGCTTTGATTCACTCAGTGAACAGTGCTTTGCTGAGGTGACGAAAAACAGTGTTTCTATGCTACTCAGTTTTGGAGAAGCAATTGCCAAAAGCAAGAGATCCCCAGAAAAGTTATTTGTACTTCTGGACATGTATGAAATAATGCAAGAGCTTCATTCTGAGATTGAAACTCTTTTTAAAGGCGAAGCTTGCTTTGGAATAAGAGAAGCTGCAACTAGTTTGACAAAACGTCTTGCACAAACAGCCCAAGAAACCTTCGGAGATTTTGAAGAGGCAGTTGAGAAAGATGCTACCAAGACTGCTGTAACAGATGGAACTGTCCATCCTCTGACAAGCTATGTTATTAACTATGTGAAGTTTTTATTTGACTACCAATCCACCTTGAAGCAACTTTTTCAGGAATTTGAAGGGGGTAATGATTCTTCACAGCTAGCATCTGTAACAGTGCGAATAATGCAAGCTTTGCAAACTAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGGATTGACACATCTTTTTCTCATGAACAATATTCATTACATTGTCAGATCGGTTCGAAGATCTGAAGCCAAGGATTTACTGGGAGATGATTGGGTACAACGACACAGGAGAATTGTGCAGCAGCACGCTAATCAATACAAGAGAAATGCCTGGGCAAAGATTCTTCAGTGCCTTTCTATTCAGGGCCTTACCTCCTCAGGTGGTGGAAGTGGTACTGCTGGTGGTGATGGTGCAACTGGAAGCAGCAGCGGTGCTTCAAGAGCAATTGTTAAAGACCGGTTTAAGGCATTCAATGTTATGTTTGAGGAACTTCATCAGAAGCAATCTCAATGGACAGTTCCGGACACTGAGTTGCGAGAGTCTCTCAGGCTTGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCCTTTGTCAAACGATTTGGGCCACTAGTGGAGAGTGGAAAGAATCCACAGAAGTACATCAAATACACTGCAGAAGATTTAGACCGCATGTTGGGTGAATTTTTTGAAGGAAAAAACATGAATGAAACTAAACGATAA 1968 0.4187 MKMGIAVAGVDVLSEKAAMMRESLQKSQTIADNVVTILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDRTLKAAEVILAHFDQYRQAEAKILKGPHEDLENYLQAIENLRSNIQFFGSKKGFKSTDGIVVHANNLLAKAISKLEDEFRQLLLSYSKPVEPERLFDCLPNSMRPSSGSPHHEGGPSGKIPSNHHSESHNNNADAVVYTPPALIPPRFLPLLHDLAQQMVEAGHQQQLLKIYRDARSNVLEESLQKLGVEKLNKDDVQKLQWEILEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFDSLSEQCFAEVTKNSVSMLLSFGEAIAKSKRSPEKLFVLLDMYEIMQELHSEIETLFKGEACFGIREAATSLTKRLAQTAQETFGDFEEAVEKDATKTAVTDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFEGGNDSSQLASVTVRIMQALQTNLDGKSKQYKDLGLTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRNAWAKILQCLSIQGLTSSGGGSGTAGGDGATGSSSGASRAIVKDRFKAFNVMFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVESGKNPQKYIKYTAEDLDRMLGEFFEGKNMNETKR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1922g00006 655 Gene3D Exocyst complex component Exo70 77 181 - -
Vium1922g00006 655 Gene3D Exocyst complex component Exo70 189 655 - -
Vium1922g00006 655 MobiDBLite consensus disorder prediction 167 202 - -
Vium1922g00006 655 Pfam Exo70 exocyst complex subunit 281 642 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium1922g00006 655 PANTHER EXOCYST COMPLEX PROTEIN EXO70 60 647 IPR004140 GO:0000145|GO:0006887
Vium1922g00006 655 SUPERFAMILY Cullin repeat-like 79 646 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1922g00006 Vium-Chr1922 35770 43732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1922g00006 10 655 EXO70 exocyst subunit family AT5G03540 75.186 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1922g00006 K07195 - gmx:100813987 1179.47