Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1917g00018 ATGCCCATGGCATCCGATCTAAACGACACCGTTTTCCCTGAAGAAGATCTCGATGACGACGACGAAACTCAAGAAGACGAAGAGGAGGATGACGAAGACGACGACGTTTTAGACGATGAAGAAACGGAACCCTCTCACTCCGTCCTCGCAGCCATAACCCTGGCTGCCCCCGCTTCCGCCGTCTCCCAAACACTCGGCACCGCGTCAACGGCTATCGTTGTCGCCGATTCCTCGCCGAAGAGGCCGCGCACGGAGCAAGTCGAGGAGAAAAAGGCGGCGCTGGACGATTCGCGGCGATTGTTCCAGCGTCTGTGGACGGACGAGGACGAAATTGGGCTCTTGCAGGGGTTTCTGGACTACACGGCGCAGCGAGGATCCTCTCACCACAACGACACTGCTTTGTTCTACGACCAGATCAAGTCGAAGCTTCAACTCGGTTTCAACAAGAACCAGCTCGTCGAGAAGCTCCGAAGGCTGAAGAAGAAGTACCGCAACGTCCTCACCAAAATCAACGATGGCAAGGAATTCTCCTTCAAGAGCCCTCACGACAGAGCCACCTTCGAAATCTCGCGGAGGATCTGGAGCAACACTGCTCCAATCACCGGCCCCGTCGAAGACGACGACGAAATCAACCCTAACCCTAATCTTATTCCCAACCCTAATTTCAGCCATTCGGCGAAGACGTCGCTGTCGCGGAAGCGGTCGCGGTCTCGACCGGAGAAGCGCGAGTTCCACGACGGTTCAGCGTTGAATAAGGATAGTAATTGTATTGGCAATAGTAACAATAATAGTAACAAAGATAATGAAAATTGTAACCATAGGCATAGCTTACAGGGTTTGATTGAAGAGACAGTGAGGAGTTGCGTGTCGCCGGTGTTGAAGGAGTTGGTGAGTGGTGGCATGGGATTTGGAAGTGGTTTTGGTTTTGGGGGAAGAGGGTTTGGAGTTGGAGGAGGGTTTCCATTGAATTCCTTGCAAATGCAAATGCCAATGGCTTTGAGTTCATTGAATTTGGGCATTGGGGAAATGGTGATGGATGAGAAGTGGAGGAAGCAACAGATTTTGGAGCTGGAAGTGTATTCCAAGCGTTTGGAATTGGTGCAGAATGAGATCAAGGTTGCTCTCGAGGAGTTGCGATCCTCCGGTGGAGGATGA 1155 0.5195 MPMASDLNDTVFPEEDLDDDDETQEDEEEDDEDDDVLDDEETEPSHSVLAAITLAAPASAVSQTLGTASTAIVVADSSPKRPRTEQVEEKKAALDDSRRLFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLTKINDGKEFSFKSPHDRATFEISRRIWSNTAPITGPVEDDDEINPNPNLIPNPNFSHSAKTSLSRKRSRSRPEKREFHDGSALNKDSNCIGNSNNNSNKDNENCNHRHSLQGLIEETVRSCVSPVLKELVSGGMGFGSGFGFGGRGFGVGGGFPLNSLQMQMPMALSSLNLGIGEMVMDEKWRKQQILELEVYSKRLELVQNEIKVALEELRSSGGG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1917g00018 384 Pfam Protein of unknown function, DUF573 101 195 IPR007592 GO:0006355
Vium1917g00018 384 Coils Coil 350 377 - -
Vium1917g00018 384 MobiDBLite consensus disorder prediction 198 271 - -
Vium1917g00018 384 MobiDBLite consensus disorder prediction 11 41 - -
Vium1917g00018 384 MobiDBLite consensus disorder prediction 252 267 - -
Vium1917g00018 384 Coils Coil 149 169 - -
Vium1917g00018 384 MobiDBLite consensus disorder prediction 214 228 - -
Vium1917g00018 384 MobiDBLite consensus disorder prediction 1 48 - -
Vium1917g00018 384 PANTHER BNAANNG10740D PROTEIN-RELATED 13 377 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1917g00018 Vium-Chr1917 167549 168912 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1917g00018 3 384 GeBP Transcription Factor Family AT5G28040 43.218 1.50e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vium1917g00018 DUF573 1.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1917g00018 - - gmx:100817182 432.95