Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1917g00016 ATGCTTTCTCCGTTGGTTTCTTGGTTCTTGTCTCCTTCCTCCTCCTCTTCCTCTTCCGAAGAAGAAGAAAACCTTGACATTAACACTCAGGATCACACTAAGCATCAAAACCACCAAAACTTCAATACACAAGATGATGATAATGACCAATATCTTAGCTCATGCGATGTGGATGAAATCATTCCCGTTGCTCTTGCCGTTCCCAGTGCCACCCCCGCCGTGACGGTGGCCTTTCCGGCCGACGATGACAGAAGCACGGTTCCCGGCACCACCGCCACTGCCACCACATTTGTAACACGCTCAAAAGGGCAGTGCTCCAACAAGTATTCGGGCATTGTGAGACAATATCAGAGACTGTGGACGAAGCAGGACGAGAAGGAACTGCTAAAGGGATACCTTGATTACATTAAGCAGCATGGGAGGACAACCACCACCCTCCAAAACGACGTAGCCTCGTTGTATGATCACGTGAGGCCCAAACTGAACGTCGATTTCAACAAGAATCAGCTTGTTGAGAAGCTGCGTAGACTAAAGAGGAAGCACAAGTTGGCTTTGAACAAAGGCACGGACAAGGAAGTTCCCTTTAGGAACCCCCAGGAACAGGCCATTTTCGAAATTTCAAACAAGATTTGGGGCAATGACACTGATATCCTATTAGACCAAGAGTCTTTGGATGGTGATGCGTCGGGACGCACTCCTGAAAGTCGTTACCTTGGGGGCAACGTTAAGGTGAAGGTTGATCAACTTGACAACAGTGATGAAATAGACGAGAGAGTGCCAAAGCGGTTGCGGTTAGATGATGCAGAAGATGTGAACAGAACAAATGAACATAACAATAGTGGCAGCCTGCAGGTCTTCATTGAGGAGACCATGAGGTCCTGTTTCTCCCCATTGCTGAAGGAAATGTTGGATGAAGTAAACCAAGAGCCACCTCCTGGGTTGGTGCCAATCCCATTGCCGCTATTTCCTGAGAAAGTAGACCATGGGCAATGGAGAAAACGAGGGATTTTAGAGCTGGAGGTGTATTTGAAAAGGTTGGAGTTGTTGCAGGATCAGATCAAGGCTAGATTGGAGGAATTGCGATCTAGACGGGAGGTGTATGATAAAACTTCTCCAGGATGTGCAGAAACAGCTTGTGCTTTATCCAACACCAACAACTTCAACGAATAG 1170 0.4735 MLSPLVSWFLSPSSSSSSSEEEENLDINTQDHTKHQNHQNFNTQDDDNDQYLSSCDVDEIIPVALAVPSATPAVTVAFPADDDRSTVPGTTATATTFVTRSKGQCSNKYSGIVRQYQRLWTKQDEKELLKGYLDYIKQHGRTTTTLQNDVASLYDHVRPKLNVDFNKNQLVEKLRRLKRKHKLALNKGTDKEVPFRNPQEQAIFEISNKIWGNDTDILLDQESLDGDASGRTPESRYLGGNVKVKVDQLDNSDEIDERVPKRLRLDDAEDVNRTNEHNNSGSLQVFIEETMRSCFSPLLKEMLDEVNQEPPPGLVPIPLPLFPEKVDHGQWRKRGILELEVYLKRLELLQDQIKARLEELRSRREVYDKTSPGCAETACALSNTNNFNE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1917g00016 389 Coils Coil 339 370 - -
Vium1917g00016 389 MobiDBLite consensus disorder prediction 1 23 - -
Vium1917g00016 389 Coils Coil 167 187 - -
Vium1917g00016 389 PANTHER BNAANNG10740D PROTEIN-RELATED 13 359 IPR007592 GO:0006355
Vium1917g00016 389 MobiDBLite consensus disorder prediction 1 27 - -
Vium1917g00016 389 Pfam Protein of unknown function, DUF573 117 212 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1917g00016 Vium-Chr1917 153395 154730 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1917g00016 60 362 GeBP Transcription Factor Family AT5G28040 32.425 1.44e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vium1917g00016 DUF573 1.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1917g00016 - - var:108344158 682.174