Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1917g00011 ATGGCGGACAAGGCAGTGACCATCCGAACCAGAAAATTCATGACAAACAGGCTTCTCTCCAGAAAACAATTCGTTGTTGATGTCCTTCACCCAGGGAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAATTGGCAAGAATGTATGATGTGAAGGACCCCAACACTGTATTTGTCTTCAAGTTCCGAACTCACTTTGGTGGTGGCAAGTCCACTGGATTTGGTTTGATCTATGATTCAGTTGACAATGCGAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGACTTGATACCAAGGTAGAGAAATCAAGGAAGCAGATGAAGGAGAGAAAGAATAGAGCCAAGAAGATTCGTGGTGTAAAGAAGACGAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATAA 414 0.442 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1917g00011 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vium1917g00011 137 Gene3D - 1 132 - -
Vium1917g00011 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vium1917g00011 137 FunFam 40S ribosomal protein S24 1 137 - -
Vium1917g00011 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Vium1917g00011 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vium1917g00011 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vium1917g00011 137 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1917g00011 Vium-Chr1917 124073 125833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1917g00011 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 86.364 2.58e-84 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1917g00011 K02974 - gmx:100499852 240.736