LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1917g00010	ATGAATGGGGTCACACACCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTAGGAAAAGGAGCTTCAAAGACAGTATATAGGGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTGTATGATTTTCTGCAAAGTCCTGAAGATCTTGAGAGGCTTTATTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGGAACATTATGAAATTCTACACTTCTTGGGTCGATACTGCTAATAGGAATATCAACTTCGTGACTGAAATGTTCACCTCCGGTACACTTAGACAGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAATGGACTTCTCTATCTTCATAGTCACGATCCCCCTGTGATCCATAGAGATCTAAAATGTGATAACATATTTGTCAATGGAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCTCATGCAGCTCATTGTGTAGGGACGCCAGAGTTCATGGCCCCTGAAGTATATGAAGAGGCGTATAATGAGCTAGTTGACATCTATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTCGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTATAAGAAAGTTGTTTCTGGGAAAAAGCCAGATGCTTTATATAGAGTGAAGGATCCGGAGGTGCGACAATTTGTTGAAAAATGCTTGGCCACGGTGTCTCTTAGGCTTTCTGCAAGGGAGCTTCTAGATGATCCATTTCTTCGAATTGATGATTATGAATATGATACGAGAACTGTAGAAAATGGAGAATTGGATGAATTTGGTCCTCTCATCAGACAGCCATTCTTTGATCTTCATCGAAGCTACAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGGTATGAAGGAGACTGGTGTCCTCATCCGGCTGAGATTGAACCAAGTGGAATTGAACTTTTTGAGTACCATGATGATGAACCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATCCGAAATATTTATTTCCCATTTGACATAGAGACGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAGCTGGACATTACTGATCAGGATGTTACCAGAATAGCTGATATGATTGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGACCGGGACCAGGAATTGACGAAACTCCCCGTTTTGCAAATCAAGGTTTCTGTCACAATTGTGTGTCTAATCATACTTCTAGCGGCTCTTTTTTGGATTTTCTCTCACACAATCCAGGTGACAAGAACATGCAACTAGGGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGCTTTGAGGAGATTACCTTCCAATCTGAAGAGTATGACAACCATGCTAGAGGGGATCTGAACATATCAAGCCAGTTAGACAGCTTGCAGTATCAGGAGTTATGGAATCAGCACGAAAGTCGTGAACTGAGTCCAGTAGAGTCTGATCAAAGCCATTCTGACGAACAATGCGAACAATTAGATAAACTACTTCCAGCTAAGGATAAAGAACAAGATGTTTGGGAAAACAAGGTTTCATTCAGTGCTGCAAATTCTCGAAGAAATTTATCTGGAAGTCATGACTTCTCTACTATCCAATCTGCCTACTGTGACCTAGGAGATGACTATGAGAAAGAGATCCAAAAGGAACTCAGATGGCTAAGAGCCAAGTACCAAATGGAATTAAGGGATCATAAGGACCGACAGTTTGAGCAATCTTCACACAGTACTAACAAAGAGCACAAAACAGAAAATGGCTTCTTGTCACCTTCACTGACAGAAACATCATTAAAAGAAGGTAACAATGGGACTCAGATGAAACCTCCTACTAATAAGTGTCATTATGATTCTAATAACCACGCTCATGTCCATGAAAGCAGCCCCAATTCGGACACCCAAAGGGCCCAAAATTGTGAGGCGACAGAATCCCCTGGCAAAGGTATGGTTACTGCAAAGAGTTTTTATACTGGCTCATTGCTTCCACACTCTCTGCACAGGACAGTTTCCCTACCAGTTGATGCTGTTGATATATAA	2214	0.416	MNGVTHLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILNGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPDALYRVKDPEVRQFVEKCLATVSLRLSARELLDDPFLRIDDYEYDTRTVENGELDEFGPLIRQPFFDLHRSYSNFSNEYSNGFGYEGDWCPHPAEIEPSGIELFEYHDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIETDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFANQGFCHNCVSNHTSSGSFLDFLSHNPGDKNMQLGCCRHGCASMHGRFEEITFQSEEYDNHARGDLNISSQLDSLQYQELWNQHESRELSPVESDQSHSDEQCEQLDKLLPAKDKEQDVWENKVSFSAANSRRNLSGSHDFSTIQSAYCDLGDDYEKEIQKELRWLRAKYQMELRDHKDRQFEQSSHSTNKEHKTENGFLSPSLTETSLKEGNNGTQMKPPTNKCHYDSNNHAHVHESSPNSDTQRAQNCEATESPGKGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI	737

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1917g00010	737	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1917g00010	737	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Vium1917g00010	737	MobiDBLite	consensus disorder prediction	626	642	-	-
	Vium1917g00010	737	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1917g00010	737	Gene3D	Phosphorylase Kinase; domain 1	8	105	-	-
	Vium1917g00010	737	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	10	658	-	-
	Vium1917g00010	737	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	374	428	IPR024678	GO:0004674\|GO:0005524
	Vium1917g00010	737	CDD	STKc_WNK	22	281	-	-
	Vium1917g00010	737	Gene3D	Transferase(Phosphotransferase) domain 1	107	286	-	-
	Vium1917g00010	737	Gene3D	-	371	436	-	-
	Vium1917g00010	737	MobiDBLite	consensus disorder prediction	626	706	-	-
	Vium1917g00010	737	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
	Vium1917g00010	737	SUPERFAMILY	Protein kinase-like (PK-like)	27	282	IPR011009	-
	Vium1917g00010	737	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-
	Vium1917g00010	737	FunFam	probable serine/threonine-protein kinase WNK9	371	455	-	-
	Vium1917g00010	737	ProSiteProfiles	Protein kinase domain profile.	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1917g00010	737	MobiDBLite	consensus disorder prediction	643	700	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1917g00010	Vium-Chr1917	109517	113207	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1917g00010	127	736	MAP Kinase Kinase Kinase	AT3G04910	53.692	0.0	616

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Vium1917g00010		Pkinase	2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1917g00010	K08867		-	gmx:100272198	1410.97