Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1917g00001 ATGTTCGATGGAGTACCTGAGCAGTTCCACCAATTCATAACTCCAAGGACCTCACTGCCTCTTCACTTACCTTTCCCTCTCCATGCTTCTGGCACTCCCAATACCACCTTCCCTTCCAATTTTGATCCTTACAACCCTCATCAGCTGCCACTCCAACCCAACACTCTCTTGCACCCGTTACACCATCCACCCCCTACCCACAAAGATGAACAAGACAAGGAACAAAACACCGCTGTCTCAATGAACTTCCAAATCCAAAGAGATCAAGGTCACCAACTTCCCCAGCTCATTCATCCCTGGACTAACGACGAAGTCCTTTCTCTCTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACTTGGGAACACGTTTCCAGGAAGCTGGCAGAGCTTGGATATAAAAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGTAGATACTTCAACAACAACATTAATTACGGCAAGAATAACAACAATTATCGGTTTCTCAGTGAGCTCGAACAGCTTTACCATCAAGGGGGTGCCGATCATCTCGGGACCCAAGAAAAGACTCACCAACTACACAAACAAGACAAGATGGACCACCATCCATTGGAAGAAGGGGATTCTGGAAAACTCGAGGCACCCGTGACAAAACAAAACCACGATGCAGCAGCTGTGGAAAAGAACCAGGCACGCAAGAGAAAGAGGCCCGGTAGGTTTGAAATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCGCAGCAAGAAGAGATGCACAACAAGCTCCTCGAGGACATGATGAAGAGAGACGAAGAGAAGTTCACTCGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTCGAGATGATGGCTCGTGAGCAGGCCATTGCAGGTGATAGACAGACCAACATTATTCAAATACTGAACAAATTCTCGGTCACTCCTGCATCGAACAAGAGCCTCAAGGTAGTAACTAATGGCTCAAACCTAAAATCTCACATTACCCAAAACCCTAATCCTTCAGAAAACATCCCAGCTACACCCGCAACAGAAAACCCTACCTCGAGTGTTGCACAAGACACATTACAACTGATTGCCAATCCTTCTACTTCTTCCTCTTCGGCTCAAGTTCCTCAACCCAACCCTAGTTCTTCCTCTCTAAATAGCCAGAATAACATAAACCCAATAGAGAGAAATTCGGTTTTGAATAAAAGCTTGTCATCAAACGTTGGCGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTGGCACTGATAAACCTGAGGTGCAGCAGTGTGAGCAACAACGGCAGCAATGAGGAGAAGGAAGGGAACAAGGTGCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAATTAGGATACAGGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATTAACAAGTACTTCAGAAAAACCAAGGATGTCAATAAGAAGAGGTCCCTCGACTCAAGGACTTGTCCCTACTTTCATCAATTGAGCAGTCTCTATAATGAAGGAAAACTGGTTCTACAATTCGAACGGCCAGAAAGCCACACGGATAATCCACCTGAGAATCTGGAGCAAGTGCAAGCGGATCAAACACGAGCCGAGTCTTCTTCTCAAGTGGGGTCTGGTGGTTTCAGCGTGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1767 0.4629 MFDGVPEQFHQFITPRTSLPLHLPFPLHASGTPNTTFPSNFDPYNPHQLPLQPNTLLHPLHHPPPTHKDEQDKEQNTAVSMNFQIQRDQGHQLPQLIHPWTNDEVLSLLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNNNNYRFLSELEQLYHQGGADHLGTQEKTHQLHKQDKMDHHPLEEGDSGKLEAPVTKQNHDAAAVEKNQARKRKRPGRFEMFKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKQEMEKMNKELEMMAREQAIAGDRQTNIIQILNKFSVTPASNKSLKVVTNGSNLKSHITQNPNPSENIPATPATENPTSSVAQDTLQLIANPSTSSSSAQVPQPNPSSSSLNSQNNINPIERNSVLNKSLSSNVGEKDDVGRRWPKDEVLALINLRCSSVSNNGSNEEKEGNKVPLWERISQGMSELGYRRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNEGKLVLQFERPESHTDNPPENLEQVQADQTRAESSSQVGSGGFSVQQQVDHGGEKTLMQVPSLDFDQF 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1917g00001 588 MobiDBLite consensus disorder prediction 377 402 - -
Vium1917g00001 588 MobiDBLite consensus disorder prediction 538 573 - -
Vium1917g00001 588 MobiDBLite consensus disorder prediction 339 365 - -
Vium1917g00001 588 FunFam Trihelix transcription factor GT-2 100 156 - -
Vium1917g00001 588 Pfam Myb/SANT-like DNA-binding domain 98 176 IPR044822 -
Vium1917g00001 588 Pfam Myb/SANT-like DNA-binding domain 427 517 IPR044822 -
Vium1917g00001 588 FunFam Trihelix transcription factor GTL2 429 494 - -
Vium1917g00001 588 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Vium1917g00001 588 MobiDBLite consensus disorder prediction 189 210 - -
Vium1917g00001 588 ProSiteProfiles Myb-like domain profile. 428 489 IPR001005 -
Vium1917g00001 588 CDD GT1 427 496 - -
Vium1917g00001 588 Coils Coil 257 277 - -
Vium1917g00001 588 MobiDBLite consensus disorder prediction 531 588 - -
Vium1917g00001 588 MobiDBLite consensus disorder prediction 53 75 - -
Vium1917g00001 588 Gene3D - 429 494 - -
Vium1917g00001 588 Gene3D - 100 156 - -
Vium1917g00001 588 PANTHER FI21293P1 63 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1917g00001 Vium-Chr1917 14047 16843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1917g00001 1 521 Trihelix Transcription Factor Family AT5G28300 40.336 1.66e-102 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium1917g00001 Myb_DNA-bind_4 7.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1917g00001 - - gmx:100804367 754.977