Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1915g00001 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCCTCGCCTTACATGTACAACTCCAATTGGCTTTTGGATGATAACAGGACCAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTCTGTAACATAGAAGCTGGCTTGATCCCGATTCCAGGCTACAGTACCACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGCTACGATGGCTTCAAAGGCCTCACTGCTAAGAGATCCTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAGTTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATCACTCGAACGCCAACTCAAGTTGCCAGTCACGCTCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATCACAACAGTGAATCTCACAGAAACCACCAGAACTTCTTCAGAAGACAGCAGCAAAAGATCCACTTCACCACAGCATTCTGTGATGCTCTCACACCACCACCAGCACCACCAGCAGCAGCCAATTTCCAGTGCTGCCTCATCAGGAATGAATTTCCAATGGAGTAATCAGTCAAATGCAGGAATAGCCATGGCTCTCAATCCTGCACATGAACAAGTGTTTGTCTCCCCTTATGGCCTTAACTCATATGGGTTTAAGGTGCAGGGCCAAAGTCTGCACAGAAGTCCTCTCCATGAGTCTTCTTACCTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAGCACTATTCCCATGCATGA 966 0.4855 MKWEMEILPPASPYMYNSNWLLDDNRTNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSEDSSKRSTSPQHSVMLSHHHQHHQQQPISSAASSGMNFQWSNQSNAGIAMALNPAHEQVFVSPYGLNSYGFKVQGQSLHRSPLHESSYLGPQTPNMVFQMQPSQHYSHA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1915g00001 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Vium1915g00001 321 SMART sant 133 183 IPR001005 -
Vium1915g00001 321 SMART sant 27 79 IPR001005 -
Vium1915g00001 321 CDD SANT 30 76 IPR001005 -
Vium1915g00001 321 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 262 IPR043363 -
Vium1915g00001 321 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Vium1915g00001 321 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Vium1915g00001 321 MobiDBLite consensus disorder prediction 117 136 - -
Vium1915g00001 321 FunFam transcription factor MYB1R1 135 186 - -
Vium1915g00001 321 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Vium1915g00001 321 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Vium1915g00001 321 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Vium1915g00001 321 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Vium1915g00001 321 Gene3D - 135 185 - -
Vium1915g00001 321 Gene3D - 23 90 - -
Vium1915g00001 321 FunFam Transcription factor SRM1 23 90 - -
Vium1915g00001 321 ProSiteProfiles SANT domain profile. 26 76 IPR017884 -
Vium1915g00001 321 CDD SANT 136 181 IPR001005 -
Vium1915g00001 321 MobiDBLite consensus disorder prediction 192 248 - -
Vium1915g00001 321 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Vium1915g00001 321 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Vium1915g00001 321 MobiDBLite consensus disorder prediction 198 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1915g00001 Vium-Chr1915 23651 26455 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1915g00001 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1915g00001 - - gmx:100784163 561.222