Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1912g00010 ATGGAGAACGTTTACAAACCAAGTAAGGAAAATCAGAAGCTTAACTTGCCAACTGGTTTTAGATTTCATCCAACTGATGAGGAGCTCATAAAATGCTACCTCACAAAGAAGGTTGCTGACAACTGTTTCTGTGCTGTGGCCATTGCTGAGGTTGATTTGAACAAGTGTGAGCCTTGGAATTTGCCTGCATTGGCTAAAATGGGGGAAACTGAGTGGTATTATTTCTGTGTGAGGGACAAAAAGTACCCAACTGGTTTAAGGGCTAATAGGGCCACTGAGGCTGGTTATTGGAAAGCCACAGGAAAAGACAAGGAGATAATAGCGGAAAATGCACTCATTGGGCTGAAGAAAACCTTAGTTTTCTACAAGGGAAGAGCTCCAAGAGGTGAAAAGACAAACTGGGTTATGCATGAATATAGGTTGGAAGGGAAACAGAATCAATACCAATATGCTAAGAGCGAATGGGTGGTGTGCAGAGTCTTTGAGAAAAGTCCTTCTGGGAGGAGATTGCACGTTAGGAGGTTGAATTCCTCTGGAAACGAATCATCATCACCTTCTTCGCTGTTGCCTCCTCTGATGGATTCTCCTCCTAACAACAGTGAAACAAGAACCACTGCTGGTGAGTTGTCTCGGGTGATCAGCCGTGATCCAAATCATACTGTGGATAAGAAGAACACACATGATGACATTGTTGAAAGCATGGAAACTCCTATTCTGAACTTGTCATCCTCTGCAACACCTTTTGCTGTTTACCCTTTTGGAAAACCAACCCTTTCGGTCGCAGACCAACCAGCCCAGATTGCAAACCAAATTGGGAACTCACAGTACCCAGATTATTGTTATATGCCTCAAGATCAGTCCTTGAAGATGCTGATGACTGGAAACCATGAACCAAGTGCAAAGCAAATTCAGAAAGCAGAGTTTTCTGATGGAAGAGAGTTTGATGCTGATATAGAAACAATGCTTGAGAATCAAGAAATTCATGAGCTTATGCAGGGCATGTGGGCACCGATTGCATGTGGAATTACTGAAGAAGGTTAA 1041 0.4304 MENVYKPSKENQKLNLPTGFRFHPTDEELIKCYLTKKVADNCFCAVAIAEVDLNKCEPWNLPALAKMGETEWYYFCVRDKKYPTGLRANRATEAGYWKATGKDKEIIAENALIGLKKTLVFYKGRAPRGEKTNWVMHEYRLEGKQNQYQYAKSEWVVCRVFEKSPSGRRLHVRRLNSSGNESSSPSSLLPPLMDSPPNNSETRTTAGELSRVISRDPNHTVDKKNTHDDIVESMETPILNLSSSATPFAVYPFGKPTLSVADQPAQIANQIGNSQYPDYCYMPQDQSLKMLMTGNHEPSAKQIQKAEFSDGREFDADIETMLENQEIHELMQGMWAPIACGITEEG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1912g00010 346 MobiDBLite consensus disorder prediction 172 209 - -
Vium1912g00010 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 235 - -
Vium1912g00010 346 SUPERFAMILY NAC domain 12 163 IPR036093 GO:0003677|GO:0006355
Vium1912g00010 346 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vium1912g00010 346 FunFam NAC domain-containing protein 100-like 25 167 - -
Vium1912g00010 346 ProSiteProfiles NAC domain profile. 16 163 IPR003441 GO:0003677|GO:0006355
Vium1912g00010 346 Gene3D NAC domain 25 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1912g00010 Vium-Chr1912 86857 88834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1912g00010 14 204 NAC Transcription Factor Family AT5G07680 63.402 1.34e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1912g00010 NAM 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1912g00010 - - gmx:100782172 458.373