Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1911g00006 ATGTCCAAACCCTGGGGCAACATCGGAGCATGGGCCGCCGATTCCGAGCGGGCCGAGGCCGAGGAGCGCGAGGCCCAGGCTGCGGCCGCGGCCGCCGAGACCCAAAACTTCCCCAGCCTCAAGGAGGCCGTCAGCTCCAAGCCCAAAAAGAAGAAGGGTACAACCATCCCGCTCTCTCAGTTCAACCAGGGCGGCTTTCCCTCCGCCGGCGAGCACCAGGGCCTCACACGCGACGAGATGTTGGCGCTTCCCACCGGTCCCAAGGAACGGTCCCCCGAGGAAATGCAGTTCAACCGCCTCGGCGGCGGTTTCTCCTCATACGACCGCTCCGCCGGTCGCTCTCGCGACCGCGACGGCGGAAACAACGAAGGCTCCTGGGGCGGTGGCGGGAGAAGATCCTATGGCGGATTCGACGAGGAACGCAGGGGTCCGAATCCTAGGGTTTCGGAACTCGATCAGCCTTCCAGGGCTGATGAGGTGGACAATTGGGCCTCCGTGAAGAAATCTGTCCCCGCGTTTGATTCTGGTCGTCAGAATCGCTATGGGGGAGGCGGCGGCGGCGGCGGCGGTTTTAGTGGTGGAGGTGGTGGTTTTGGTGGCGGCGGTGGCGGTGGTTTTGGTGGTGCGTCTAGGGCTGATGGTGTGGATAATTGGGCGGTTGGTAAGAAGGCTGCTCCTGTTAGATCTTCCAATTTTGGTTCAGGTTTTCGTGATTCGGGCGTGGAACCGGATCGTTGGTCGAGAGGTGGTCCGTCGCGTGAGACGGAGCGGACGGAGCGGCCGAGGCTGGTATTAGATCCGCCGAGGGGCGATGGTTCGGTGAATGATGCTTCTGTGAAGGCGACAAACAAGGGCAATCCTTTCGGCGCGGCGAGGCCCAGGGAGGAGGTGTTGGCTGAGAAGGGATTGGACTGGAAGAAGATGGATTCAGAGATTGAGGCGAAGAAAACGAGCCGGCCCACGAGTTCTCACTCCAGCAGGCCTTCCAGTGCTCAGTCCAATCGCTCTGAGGGTCCCGCGTTGCAGGGGGTCGATGCTGTGCCGAAATCGAGGCCCAAGTTGAATCCGTTTGGGGATGCCAAGCCTCGGGAGATTCTGTTGGGTGAGCGAGGCATGGATTGGAGGAAAATTGATCTTGATTTGGAGCATCGCTCTGTTGACAGGCCTGAGACAATGGAGGAAAAATTGTTAAAAGAAGAAATTGATAATTTGAAGAAGGAACTTGAGAAAGAGTCTCCAATAAATTCGAACAAGGAATCTGAGGGTGAAGCTGGTATAGACCAAACCAGTACATATGAAATATTACAACAGAAAGAAAAGGAGCTGGAAGCTCTTGTCCGTGATTTGGATGATAAAGTACGGTTTGGACAGAAAGCCGTTGAGAGGCCAGGTTCATCAGCAGGAAGATCTTCTGGTTTTTCTGATAGGCCACCTTCTAGATCTGGTTCATTTGAGGATTCTAGAAGCGTAGATTATACAGATAGACCACGATCTCGTGGTACAGCAGGTACAGGAGATGTGTGGACCCGTCCTAGTGATGACAGAAGACAGTTTCAAGGTAGTCGGGAAAGGGGGTGGTTTTCTGGCAGCAGAGATTTGAATAGGTCAAATTCAAGAGAGCGTTGGTGA 1629 0.5574 MSKPWGNIGAWAADSERAEAEEREAQAAAAAAETQNFPSLKEAVSSKPKKKKGTTIPLSQFNQGGFPSAGEHQGLTRDEMLALPTGPKERSPEEMQFNRLGGGFSSYDRSAGRSRDRDGGNNEGSWGGGGRRSYGGFDEERRGPNPRVSELDQPSRADEVDNWASVKKSVPAFDSGRQNRYGGGGGGGGGFSGGGGGFGGGGGGGFGGASRADGVDNWAVGKKAAPVRSSNFGSGFRDSGVEPDRWSRGGPSRETERTERPRLVLDPPRGDGSVNDASVKATNKGNPFGAARPREEVLAEKGLDWKKMDSEIEAKKTSRPTSSHSSRPSSAQSNRSEGPALQGVDAVPKSRPKLNPFGDAKPREILLGERGMDWRKIDLDLEHRSVDRPETMEEKLLKEEIDNLKKELEKESPINSNKESEGEAGIDQTSTYEILQQKEKELEALVRDLDDKVRFGQKAVERPGSSAGRSSGFSDRPPSRSGSFEDSRSVDYTDRPRSRGTAGTGDVWTRPSDDRRQFQGSRERGWFSGSRDLNRSNSRERW 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1911g00006 542 MobiDBLite consensus disorder prediction 294 320 - -
Vium1911g00006 542 MobiDBLite consensus disorder prediction 467 486 - -
Vium1911g00006 542 MobiDBLite consensus disorder prediction 455 542 - -
Vium1911g00006 542 Pfam Plant specific eukaryotic initiation factor 4B 1 525 IPR010433 GO:0003743
Vium1911g00006 542 MobiDBLite consensus disorder prediction 134 163 - -
Vium1911g00006 542 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 541 IPR010433 GO:0003743
Vium1911g00006 542 MobiDBLite consensus disorder prediction 52 69 - -
Vium1911g00006 542 MobiDBLite consensus disorder prediction 404 432 - -
Vium1911g00006 542 Coils Coil 432 452 - -
Vium1911g00006 542 MobiDBLite consensus disorder prediction 1 365 - -
Vium1911g00006 542 Coils Coil 13 35 - -
Vium1911g00006 542 MobiDBLite consensus disorder prediction 321 339 - -
Vium1911g00006 542 MobiDBLite consensus disorder prediction 418 432 - -
Vium1911g00006 542 MobiDBLite consensus disorder prediction 241 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1911g00006 Vium-Chr1911 36674 42019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1911g00006 1 542 Eukaryotic Initiation Factors Gene Family AT3G26400 55.950 1.90e-152 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1911g00006 - - gmx:100784238 795.423