Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1911g00003 ATGCAGAACTTAAGTATCGCCTATCGTCTTCGAGAACTCAAACCTGGTGAACCTGTTCTGGACTGGCCTACTAGAAAACGAGTGGCCCTGGGAACAGCTCGAGGCTTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCTTGGCAAAGTTAGTCGATGTTCAGAAAACCAACGTGACAACTGAAATTCGTGGGACGATGGGCCACATAGCTCCAGAATATTTGTCCACTGGAAAATCTTCGGGAAGGACTGATGTTTTTGGTTATGGGATTATGCTCTTGGAGCTCGTTACAGGTCAACGAGCAATTGAATTTTCACGATTAGAAGAGGAAGATGACGTGCTGCTACTTGACCATGTAAGATCACTTTCTAACATCNCATCTGACTGCTGCTATTTTAAATATTGA 480 0.4229 MQNLSIAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVQKTNVTTEIRGTMGHIAPEYLSTGKSSGRTDVFGYGIMLLELVTGQRAIEFSRLEEEDDVLLLDHVRSLSNIXSDCCYFKY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1911g00003 159 SUPERFAMILY Protein kinase-like (PK-like) 4 134 IPR011009 -
Vium1911g00003 159 ProSiteProfiles Protein kinase domain profile. 1 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1911g00003 159 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 136 - -
Vium1911g00003 159 FunFam Somatic embryogenesis receptor-like kinase 1 1 152 - -
Vium1911g00003 159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Vium1911g00003 159 Gene3D Transferase(Phosphotransferase) domain 1 1 155 - -
Vium1911g00003 159 Pfam Protein kinase domain 24 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1911g00003 159 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1911g00003 Vium-Chr1911 31596 32831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1911g00003 1 147 Receptor kinase-like Gene Family AT5G10290 88.435 1.02e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium1911g00003 Pkinase 1.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1911g00003 - - aew:130773775 279.641