Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1911g00002 ATGGTTTACCAAGTGAATACTGATGCAGAACTCAAACCTGGTGAACCTGTTCTGGACTGGCCTACTAGAAAACGAGTGGCCCTGGGAACAGCTCGAGGCTTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCTTGGCAAAGTTAGTCGATGTTCAGAAAACCAACGTGACAACTGAAATTCGTGGGACGATGGGCCACATAGCTCCAGAATATTTGTCCACTGGAAAATCTTCGGGAAGGACTGATGTTTTTGGTTATGGGATTATGCTCTTGGAGCTCGTTACAGGTCAACGAGCAATTGAATTTTCACGATTAGAAGAGGAAGATGACGTGCTGCTACTTGACCATGTAAGATCACTTTCTAACATCATGGCCTCCTTATTTGTTGTCTTTTTGGTTTCTTTCTTGTTTGTGTTTAGCACGCTTTATATCTTTTGTGTGACTCTTGGATGA 528 0.4167 MVYQVNTDAELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVQKTNVTTEIRGTMGHIAPEYLSTGKSSGRTDVFGYGIMLLELVTGQRAIEFSRLEEEDDVLLLDHVRSLSNIMASLFVVFLVSFLFVFSTLYIFCVTLG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1911g00002 175 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Vium1911g00002 175 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 138 - -
Vium1911g00002 175 SMART serkin_6 2 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1911g00002 175 SUPERFAMILY Protein kinase-like (PK-like) 15 133 IPR011009 -
Vium1911g00002 175 Gene3D Transferase(Phosphotransferase) domain 1 8 154 - -
Vium1911g00002 175 FunFam Somatic embryogenesis receptor-like kinase 1 3 155 - -
Vium1911g00002 175 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1911g00002 175 Pfam Protein kinase domain 23 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1911g00002 Vium-Chr1911 30511 31606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1911g00002 10 145 Receptor kinase-like Gene Family AT5G10290 88.971 7.82e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium1911g00002 Pkinase 2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1911g00002 - - vum:124828345 330.872